Information for 4-AGCTGAMAWCAATCAS (Motif 4)

C G T A A T C G A G T C A G C T A T C G G T C A T G C A T C G A C G A T A G T C C G T A T G C A G A C T A T G C C G T A A T C G
Reverse Opposite:
T A G C A C G T A T C G C G T A A C G T A C G T C T A G G C T A A G C T A C G T A C G T A T G C C T G A A C T G A T G C C G A T
p-value:1e-14
log p-value:-3.286e+01
Information Content per bp:1.729
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.0 +/- 19.8bp
Average Position of motif in Background86.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.62
Offset:5
Orientation:forward strand
Alignment:AGCTGAMAWCAATCAS-
-----CCATCAATCAAA
 C G T A A T C G A G T C A G C T A T C G G T C A T G C A T C G A C G A T A G T C C G T A T G C A G A C T A T G C C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGCTGAMAWCAATCAS---
---GAAGATCAATCACTAA
 C G T A A T C G A G T C A G C T A T C G G T C A T G C A T C G A C G A T A G T C C G T A T G C A G A C T A T G C C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

PB0144.1_Lef1_2/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGCTGAMAWCAATCAS---
---GAAGATCAATCACTTA
 C G T A A T C G A G T C A G C T A T C G G T C A T G C A T C G A C G A T A G T C C G T A T G C A G A C T A T G C C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AGCTGAMAWCAATCAS
----GYCATCMATCAT
 C G T A A T C G A G T C A G C T A T C G G T C A T G C A T C G A C G A T A G T C C G T A T G C A G A C T A T G C C G T A A T C G
A C G T A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AGCTGAMAWCAATCAS
-----TCATCAATCA-
 C G T A A T C G A G T C A G C T A T C G G T C A T G C A T C G A C G A T A G T C C G T A T G C A G A C T A T G C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

Dux/MA0611.1/Jaspar

Match Rank:6
Score:0.59
Offset:8
Orientation:forward strand
Alignment:AGCTGAMAWCAATCAS
--------CCAATCAA
 C G T A A T C G A G T C A G C T A T C G G T C A T G C A T C G A C G A T A G T C C G T A T G C A G A C T A T G C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PB0062.1_Sox12_1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGCTGAMAWCAATCAS
-NTTNAGAACAATTA-
 C G T A A T C G A G T C A G C T A T C G G T C A T G C A T C G A C G A T A G T C C G T A T G C A G A C T A T G C C G T A A T C G
A C G T C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T

PH0037.1_Hdx/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCTGAMAWCAATCAS
AAGGCGAAATCATCGCA
 A C G T C G T A A T C G A G T C A G C T A T C G G T C A T G C A T C G A C G A T A G T C C G T A T G C A G A C T A T G C C G T A A T C G
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Hoxa9/MA0594.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGCTGAMAWCAATCAS
----GCCATAAATCA-
 C G T A A T C G A G T C A G C T A T C G G T C A T G C A T C G A C G A T A G T C C G T A T G C A G A C T A T G C C G T A A T C G
A C G T A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGCTGAMAWCAATCAS
---RGCCATYAATCA-
 C G T A A T C G A G T C A G C T A T C G G T C A T G C A T C G A C G A T A G T C C G T A T G C A G A C T A T G C C G T A A T C G
A C G T A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T