Information for 3-GACATGTMTA (Motif 3)

C T A G C T G A T A G C C G T A C G A T C T A G C G A T T G A C C G A T T G C A
Reverse Opposite:
A C G T G C T A A C T G G C T A G A T C C G T A G C A T A T C G G A C T G A T C
p-value:1e-34
log p-value:-7.961e+01
Information Content per bp:1.610
Number of Target Sequences with motif115.0
Percentage of Target Sequences with motif16.27%
Number of Background Sequences with motif1891.9
Percentage of Background Sequences with motif4.17%
Average Position of motif in Targets49.4 +/- 23.8bp
Average Position of motif in Background49.1 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0086.1_Irx5/Jaspar

Match Rank:1
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----GACATGTMTA--
ANTNNTACATGTANNTN
 A C G T A C G T A C G T A C G T A C G T C T A G C T G A T A G C C G T A C G A T C T A G C G A T T G A C C G A T T G C A A C G T A C G T
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0082.1_Irx2/Jaspar

Match Rank:2
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----GACATGTMTA--
ANTNTTACATGTATNTA
 A C G T A C G T A C G T A C G T A C G T C T A G C T G A T A G C C G T A C G A T C T A G C G A T T G A C C G A T T G C A A C G T A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A

PH0084.1_Irx3_2/Jaspar

Match Rank:3
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----GACATGTMTA--
NNTATTACATGTANNNT
 A C G T A C G T A C G T A C G T A C G T C T A G C T G A T A G C C G T A C G A T C T A G C G A T T G A C C G A T T G C A A C G T A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0083.1_Irx3_1/Jaspar

Match Rank:4
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----GACATGTMTA--
ANTATTACATGTANNNN
 A C G T A C G T A C G T A C G T A C G T C T A G C T G A T A G C C G T A C G A T C T A G C G A T T G A C C G A T T G C A A C G T A C G T
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T

PH0085.1_Irx4/Jaspar

Match Rank:5
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GACATGTMTA---
AATATACATGTAAAACA
 A C G T A C G T A C G T A C G T C T A G C T G A T A G C C G T A C G A T C T A G C G A T T G A C C G A T T G C A A C G T A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

PH0087.1_Irx6/Jaspar

Match Rank:6
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----GACATGTMTA--
ANTTNTACATGTANTTN
 A C G T A C G T A C G T A C G T A C G T C T A G C T G A T A G C C G T A C G A T C T A G C G A T T G A C C G A T T G C A A C G T A C G T
G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T

FOXG1/MA0613.1/Jaspar

Match Rank:7
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GACATGTMTA-
---TTGTTTAC
 C T A G C T G A T A G C C G T A C G A T C T A G C G A T T G A C C G A T T G C A A C G T
A C G T A C G T A C G T C G A T A C G T A C T G A C G T A C G T A C G T C G T A A G T C

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GACATGTMTA----
--CBTGTTTAYAWW
 C T A G C T G A T A G C C G T A C G A T C T A G C G A T T G A C C G A T T G C A A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T

FOXD1/MA0031.1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GACATGTMTA-
---ATGTTTAC
 C T A G C T G A T A G C C G T A C G A T C T A G C G A T T G A C C G A T T G C A A C G T
A C G T A C G T A C G T G C T A A C G T C A T G A C G T A C G T A C G T C G T A A G T C

FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GACATGTMTA---
-SCHTGTTTACAT
 C T A G C T G A T A G C C G T A C G A T C T A G C G A T T G A C C G A T T G C A A C G T A C G T A C G T
A C G T T A C G T A G C G C T A C G A T C T A G A C G T C A G T C A G T G C T A A G T C G T C A G C A T