Information for 10-CTCAGGGGCAAAG (Motif 29)

A T G C A C G T A G T C C G T A C T A G A C T G A C T G T A C G A G T C G C T A C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C A G T A C T G A G T C A G T C A G T C A G T C A C G T A C T G C G T A A T C G
p-value:1e-8
log p-value:-2.015e+01
Information Content per bp:1.879
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.8 +/- 22.7bp
Average Position of motif in Background31.8 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTCAGGGGCAAAG
NTCAAGGTCA---
 A T G C A C G T A G T C C G T A C T A G A C T G A C T G T A C G A G T C G C T A C G T A C G T A A C T G
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTCAGGGGCAAAG
BTCAAGGTCA---
 A T G C A C G T A G T C C G T A C T A G A C T G A C T G T A C G A G T C G C T A C G T A C G T A A C T G
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTCAGGGGCAAAG
-TCAAGGTCATA-
 A T G C A C G T A G T C C G T A C T A G A C T G A C T G T A C G A G T C G C T A C G T A C G T A A C T G
A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTCAGGGGCAAAG
AGGTCAAGGTCA---
 A C G T A C G T A T G C A C G T A G T C C G T A C T A G A C T G A C T G T A C G A G T C G C T A C G T A C G T A A C T G
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTCAGGGGCAAAG----
--GTAGGGCAAAGGTCA
 A T G C A C G T A G T C C G T A C T A G A C T G A C T G T A C G A G T C G C T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTCAGGGGCAAAG----
---TGGGGCAAAGGTCA
 A T G C A C G T A G T C C G T A C T A G A C T G A C T G T A C G A G T C G C T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTCAGGGGCAAAG----
--AGAGTCCAAAGTCCA
 A T G C A C G T A G T C C G T A C T A G A C T G A C T G T A C G A G T C G C T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

Hnf4a/MA0114.3/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTCAGGGGCAAAG------
---GGGGTCAAAGTCCAAT
 A T G C A C G T A G T C C G T A C T A G A C T G A C T G T A C G A G T C G C T A C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTCAGGGGCAAAG
--CAAGGHCANV-
 A T G C A C G T A G T C C G T A C T A G A C T G A C T G T A C G A G T C G C T A C G T A C G T A A C T G
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTCAGGGGCAAAG-
----GGAACAAAGR
 A T G C A C G T A G T C C G T A C T A G A C T G A C T G T A C G A G T C G C T A C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G