Information for 10-GCAAGTAAGT (Motif 19)

A C T G G T A C C T G A C G T A A C T G A G C T T C G A C G T A A C T G C A G T
Reverse Opposite:
G C T A G T A C A C G T A G C T C T G A A G T C A C G T A G C T A C T G A G T C
p-value:1e-10
log p-value:-2.418e+01
Information Content per bp:1.850
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.84%
Number of Background Sequences with motif61.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets52.0 +/- 25.8bp
Average Position of motif in Background43.1 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GCAAGTAAGT--
-CAGGTAAGTAT
 A C T G G T A C C T G A C G T A A C T G A G C T T C G A C G T A A C T G C A G T A C G T A C G T
A C G T T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCAAGTAAGT
AAGGCAAGTGT--
 A C G T A C G T A C G T A C T G G T A C C T G A C G T A A C T G A G C T T C G A C G T A A C T G C A G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCAAGTAAGT---
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T A C T G G T A C C T G A C G T A A C T G A G C T T C G A C G T A A C T G C A G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCAAGTAAGT---
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T A C T G G T A C C T G A C G T A A C T G A G C T T C G A C G T A A C T G C A G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCAAGTAAGT---
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T A C G T A C T G G T A C C T G A C G T A A C T G A G C T T C G A C G T A A C T G C A G T A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----GCAAGTAAGT---
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T A C G T A C T G G T A C C T G A C G T A A C T G A G C T T C G A C G T A A C T G C A G T A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCAAGTAAGT
BGCACGTA---
 A C G T A C T G G T A C C T G A C G T A A C T G A G C T T C G A C G T A A C T G C A G T
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCAAGTAAGT--
ACCGGCAATTAATAAA
 A C G T A C G T A C G T A C G T A C T G G T A C C T G A C G T A A C T G A G C T T C G A C G T A A C T G C A G T A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

PB0012.1_Elf3_1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCAAGTAAGT
AACAAGGAAGTAA--
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C T G A C G T A A C T G A G C T T C G A C G T A A C T G C A G T
C G A T C G T A G T A C T G C A T G C A C T A G C A T G C G T A G C T A T C A G G A C T C G T A T C G A A C G T A C G T

Hmx2/MA0897.1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCAAGTAAGT---
ACAAGCAATTAAAGAAT
 A C G T A C G T A C G T A C G T A C T G G T A C C T G A C G T A A C T G A G C T T C G A C G T A A C T G C A G T A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T