Information for 4-YRGGASAMAGWCATKT (Motif 5)

A G C T C T G A A C T G A C T G C G T A A T C G C G T A G T C A C G T A A C T G C G T A A G T C C G T A A C G T A C G T C G A T
Reverse Opposite:
C G T A G T A C C G T A A C G T A C T G G C A T A G T C C G A T A C G T A C G T A T G C A C G T G T A C A G T C A G C T C T G A
p-value:1e-14
log p-value:-3.300e+01
Information Content per bp:1.807
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.9 +/- 24.1bp
Average Position of motif in Background36.2 +/- 12.3bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:YRGGASAMAGWCATKT
-AGGTCAAGGTCA---
 A G C T C T G A A C T G A C T G C G T A A T C G C G T A G T C A C G T A A C T G C G T A A G T C C G T A A C G T A C G T C G A T
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:YRGGASAMAGWCATKT
-GGAACAAAGR-----
 A G C T C T G A A C T G A C T G C G T A A T C G C G T A G T C A C G T A A C T G C G T A A G T C C G T A A C G T A C G T C G A T
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:YRGGASAMAGWCATKT
-AGGTGNCAGACAG--
 A G C T C T G A A C T G A C T G C G T A A T C G C G T A G T C A C G T A A C T G C G T A A G T C C G T A A C G T A C G T C G A T
A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:4
Score:0.57
Offset:9
Orientation:reverse strand
Alignment:YRGGASAMAGWCATKT
---------GTCATN-
 A G C T C T G A A C T G A C T G C G T A A T C G C G T A G T C A C G T A A C T G C G T A A G T C C G T A A C G T A C G T C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T

SOX10/MA0442.1/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:YRGGASAMAGWCATKT
----ACAAAG------
 A G C T C T G A A C T G A C T G C G T A A T C G C G T A G T C A C G T A A C T G C G T A A G T C C G T A A C G T A C G T C G A T
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:YRGGASAMAGWCATKT
-AGGTGHCAGACA---
 A G C T C T G A A C T G A C T G C G T A A T C G C G T A G T C A C G T A A C T G C G T A A G T C C G T A A C G T A C G T C G A T
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:YRGGASAMAGWCATKT
-AGGTCAAGGTCA---
 A G C T C T G A A C T G A C T G C G T A A T C G C G T A G T C A C G T A A C T G C G T A A G T C C G T A A C G T A C G T C G A T
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T A C G T

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:YRGGASAMAGWCATKT--
---AGGGAAGTCATTTCT
 A G C T C T G A A C T G A C T G C G T A A T C G C G T A G T C A C G T A A C T G C G T A A G T C C G T A A C G T A C G T C G A T A C G T A C G T
A C G T A C G T A C G T C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:YRGGASAMAGWCATKT
-AGGTCANTGACCTN-
 A G C T C T G A A C T G A C T G C G T A A T C G C G T A G T C A C G T A A C T G C G T A A G T C C G T A A C G T A C G T C G A T
A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:YRGGASAMAGWCATKT
-VRRACAAWGG-----
 A G C T C T G A A C T G A C T G C G T A A T C G C G T A G T C A C G T A A C T G C G T A A G T C C G T A A C G T A C G T C G A T
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T