Information for 12-TAGGTTAAGNAAAGAA (Motif 27)

A C G T C G T A C T A G A C T G A C G T C A G T G T C A C G T A A C T G A C G T C G T A C T G A C T G A A C T G T C G A C G T A
Reverse Opposite:
A C G T A C G T A G T C A G C T A G C T A C G T A C G T A G T C A C G T A C G T G C T A C G T A G T A C A G T C A C G T C G T A
p-value:1e-6
log p-value:-1.435e+01
Information Content per bp:1.795
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 26.0bp
Average Position of motif in Background67.9 +/- 9.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SA0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TAGGTTAAGNAAAGAA----
AANGTGAAGNANNGTNAAGG
 A C G T C G T A C T A G A C T G A C G T C A G T G T C A C G T A A C T G A C G T C G T A C T G A C T G A A C T G T C G A C G T A A C G T A C G T A C G T A C G T
G C T A T C G A C T A G A C T G A C G T C T A G T C G A T C G A C T A G C G T A C T G A T C A G C T A G C T A G C G A T C G T A C G T A C T G A T C A G C T A G

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TAGGTTAAGNAAAGAA
-AGGTCAAGGTCA---
 A C G T C G T A C T A G A C T G A C G T C A G T G T C A C G T A A C T G A C G T C G T A C T G A C T G A A C T G T C G A C G T A
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TAGGTTAAGNAAAGAA
ACTTAGTTAACTAAAAA-
 A C G T A C G T A C G T C G T A C T A G A C T G A C G T C A G T G T C A C G T A A C T G A C G T C G T A C T G A C T G A A C T G T C G A C G T A
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TAGGTTAAGNAAAGAA--
-AGGTCAACTAAAGGTCA
 A C G T C G T A C T A G A C T G A C G T C A G T G T C A C G T A A C T G A C G T C G T A C T G A C T G A A C T G T C G A C G T A A C G T A C G T
A C G T T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

RARA(var.2)/MA0730.1/Jaspar

Match Rank:5
Score:0.50
Offset:1
Orientation:forward strand
Alignment:TAGGTTAAGNAAAGAA--
-AGGTCATGCAAAGGTCA
 A C G T C G T A C T A G A C T G A C G T C A G T G T C A C G T A A C T G A C G T C G T A C T G A C T G A A C T G T C G A C G T A A C G T A C G T
A C G T T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

PH0167.1_Tcf1/Jaspar

Match Rank:6
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---TAGGTTAAGNAAAGAA
NTTTTAGTTAACNNAGN--
 A C G T A C G T A C G T A C G T C G T A C T A G A C T G A C G T C A G T G T C A C G T A A C T G A C G T C G T A C T G A C T G A A C T G T C G A C G T A
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G A C G T A C G T

PB0015.1_Foxa2_1/Jaspar

Match Rank:7
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--TAGGTTAAGNAAAGAA
AAAAAGTAAACAAAGAC-
 A C G T A C G T A C G T C G T A C T A G A C T G A C G T C A G T G T C A C G T A A C T G A C G T C G T A C T G A C T G A A C T G T C G A C G T A
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:8
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:TAGGTTAAGNAAAGAA---
-------AGAAACGAAAGT
 A C G T C G T A C T A G A C T G A C G T C A G T G T C A C G T A A C T G A C G T C G T A C T G A C T G A A C T G T C G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:TAGGTTAAGNAAAGAA
-AGGTCAAGGTCA---
 A C G T C G T A C T A G A C T G A C G T C A G T G T C A C G T A A C T G A C G T C G T A C T G A C T G A A C T G T C G A C G T A
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:10
Score:0.48
Offset:-6
Orientation:forward strand
Alignment:------TAGGTTAAGNAAAGAA
TATAAGTAGGTCAA--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G A C T G A C G T C A G T G T C A C G T A A C T G A C G T C G T A C T G A C T G A A C T G T C G A C G T A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T