Information for 10-CCARARGCATSAS (Motif 22)

A T G C A G T C C G T A C T G A C G T A C T G A A C T G A G T C C G T A A C G T A T C G C G T A A T G C
Reverse Opposite:
A T C G A C G T A T G C C G T A A C G T A C T G A G T C A G C T A C G T A G C T A C G T C T A G A T C G
p-value:1e-7
log p-value:-1.682e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.4 +/- 34.0bp
Average Position of motif in Background61.3 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCARARGCATSAS
AGCCTCAGGCA----
 A C G T A C G T A T G C A G T C C G T A C T G A C G T A C T G A A C T G A G T C C G T A A C G T A T C G C G T A A T G C
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCARARGCATSAS
AGCCTCAGGCA----
 A C G T A C G T A T G C A G T C C G T A C T G A C G T A C T G A A C T G A G T C C G T A A C G T A T C G C G T A A T G C
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCARARGCATSAS
CGCCTCAGGCA----
 A C G T A C G T A T G C A G T C C G T A C T G A C G T A C T G A A C T G A G T C C G T A A C G T A T C G C G T A A T G C
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:4
Score:0.55
Offset:7
Orientation:forward strand
Alignment:CCARARGCATSAS
-------CATGAC
 A T G C A G T C C G T A C T G A C G T A C T G A A C T G A G T C C G T A A C G T A T C G C G T A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCARARGCATSAS-
TGCCAAAATAAACANN
 A C G T A C G T A T G C A G T C C G T A C T G A C G T A C T G A A C T G A G T C C G T A A C G T A T C G C G T A A T G C A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CCARARGCATSAS
---AAACMATTAN
 A T G C A G T C C G T A C T G A C G T A C T G A A C T G A G T C C G T A A C G T A T C G C G T A A T G C
A C G T A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:7
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCARARGCATSAS
CCGCCCAAGGGCAG---
 A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T G A C G T A C T G A A C T G A G T C C G T A A C G T A T C G C G T A A T G C
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CCARARGCATSAS
----AAGCTTG--
 A T G C A G T C C G T A C T G A C G T A C T G A A C T G A G T C C G T A A C G T A T C G C G T A A T G C
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CCARARGCATSAS-
------NCGTGACN
 A T G C A G T C C G T A C T G A C G T A C T G A A C T G A G T C C G T A A C G T A T C G C G T A A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----CCARARGCATSAS
ATTGCCTCAGGCAAT--
 A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T G A C G T A C T G A A C T G A G T C C G T A A C G T A T C G C G T A A T G C
C G T A C A G T G C A T T C A G G A T C G T A C A C G T A T G C G T C A C T A G C A T G G T A C C T G A G T C A G C A T A C G T A C G T