Information for 9-CTGGAGGTTCCCCCAA (Motif 15)

A T G C A C G T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A G T C A G T C A G T C A G T C A G T C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G C T A G A C T G A C T G A C T G G T C A C G T A T A G C G T A C A C G T A G T C A G T C C G T A A T C G
p-value:1e-9
log p-value:-2.210e+01
Information Content per bp:1.915
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.2 +/- 20.3bp
Average Position of motif in Background50.1 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CTGGAGGTTCCCCCAA
--GGGGATTCCCCC--
 A T G C A C G T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A G T C A G T C A G T C A G T C A G T C C G T A C T G A
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T A C G T

PB0156.1_Plagl1_2/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGGAGGTTCCCCCAA--
-NNNNGGTACCCCCCANN
 A T G C A C G T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A G T C A G T C A G T C A G T C A G T C C G T A C T G A A C G T A C G T
A C G T G C T A C T G A C T A G C A T G C A T G C A T G G A C T C G T A A G T C T A G C A G T C A G T C G A T C G A T C C G T A T A C G G A T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTGGAGGTTCCCCCAA
--GGAAATTCCC----
 A T G C A C G T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A G T C A G T C A G T C A G T C A G T C C G T A C T G A
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGGAGGTTCCCCCAA
-AGGGGATTCCCCT--
 A T G C A C G T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A G T C A G T C A G T C A G T C A G T C C G T A C T G A
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTGGAGGTTCCCCCAA
-GGGAATTTCC-----
 A T G C A C G T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A G T C A G T C A G T C A G T C A G T C C G T A C T G A
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTGGAGGTTCCCCCAA
-GGGGATTTCC-----
 A T G C A C G T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A G T C A G T C A G T C A G T C A G T C C G T A C T G A
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGGAGGTTCCCCCAA
-AGGGGATTCCCCT--
 A T G C A C G T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A G T C A G T C A G T C A G T C A G T C C G T A C T G A
A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CTGGAGGTTCCCCCAA----
---AGGAGACCCCCAATTTG
 A T G C A C G T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A G T C A G T C A G T C A G T C A G T C C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTGGAGGTTCCCCCAA
NGGGGATTTCCC----
 A T G C A C G T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A G T C A G T C A G T C A G T C A G T C C G T A C T G A
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:10
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:CTGGAGGTTCCCCCAA
--------TCCCCA--
 A T G C A C G T A C T G A C T G C G T A A C T G A C T G A C G T A C G T A G T C A G T C A G T C A G T C A G T C C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T A C G T