Information for 10-AGACATGTTG (Motif 12)

C G T A C A T G C G T A A G T C C G T A C A G T T A C G C G A T C A G T A C T G
Reverse Opposite:
A G T C G T C A C G T A A T G C G T C A G C A T A C T G C G A T G T A C A C G T
p-value:1e-10
log p-value:-2.351e+01
Information Content per bp:1.743
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif5.89%
Number of Background Sequences with motif810.2
Percentage of Background Sequences with motif1.78%
Average Position of motif in Targets48.4 +/- 28.5bp
Average Position of motif in Background50.6 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT1/MA0743.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AGACATGTTG---
ANCCACCTGTTGCNC
 A C G T A C G T C G T A C A T G C G T A A G T C C G T A C A G T T A C G C G A T C A G T A C T G A C G T A C G T A C G T
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C

SCRT2/MA0744.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGACATGTTG---
CCACCTGTTGCAT
 C G T A C A T G C G T A A G T C C G T A C A G T T A C G C G A T C A G T A C T G A C G T A C G T A C G T
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGACATGTTG----
AATATACATGTAAAATT
 A C G T A C G T A C G T C G T A C A T G C G T A A G T C C G T A C A G T T A C G C G A T C A G T A C T G A C G T A C G T A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

PROX1/MA0794.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGACATGTTG
TAAGGCGTCTTG
 A C G T A C G T C G T A C A T G C G T A A G T C C G T A C A G T T A C G C G A T C A G T A C T G
A G C T T C G A G T C A T C A G C T A G G T A C C T A G A G C T G A T C C G A T G A C T T C A G

PH0082.1_Irx2/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGACATGTTG----
TAAATACATGTAAAATT
 A C G T A C G T A C G T C G T A C A T G C G T A A G T C C G T A C A G T T A C G C G A T C A G T A C T G A C G T A C G T A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

PH0083.1_Irx3_1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGACATGTTG----
AAAATACATGTAATACT
 A C G T A C G T A C G T C G T A C A T G C G T A A G T C C G T A C A G T T A C G C G A T C A G T A C T G A C G T A C G T A C G T A C G T
C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

PH0084.1_Irx3_2/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGACATGTTG----
AATATACATGTAATATA
 A C G T A C G T A C G T C G T A C A T G C G T A A G T C C G T A C A G T T A C G C G A T C A G T A C T G A C G T A C G T A C G T A C G T
C G T A C G T A C G A T C G T A C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A T C G A C G A T C G T A G A C T C G A T

CLOCK/MA0819.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGACATGTTG
AACACGTGTT-
 A C G T C G T A C A T G C G T A A G T C C G T A C A G T T A C G C G A T C A G T A C T G
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGACATGTTG
CCAGACRSVB--
 A C G T A C G T C G T A C A T G C G T A A G T C C G T A C A G T T A C G C G A T C A G T A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGACATGTTG
CCAGACAG----
 A C G T A C G T C G T A C A T G C G T A A G T C C G T A C A G T T A C G C G A T C A G T A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T