Information for 4-GCAWGTWCCM (Motif 4)

C T A G A G T C T C G A C G A T A C T G G C A T C G A T T G A C T A G C G T C A
Reverse Opposite:
C A G T A T C G A C T G G C T A C G T A G T A C C G T A A G C T T C A G A G T C
p-value:1e-30
log p-value:-6.995e+01
Information Content per bp:1.608
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif11.13%
Number of Background Sequences with motif1019.2
Percentage of Background Sequences with motif2.22%
Average Position of motif in Targets51.1 +/- 20.5bp
Average Position of motif in Background49.1 +/- 36.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0086.1_Irx5/Jaspar

Match Rank:1
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GCAWGTWCCM--
AATATACATGTAAAATT
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C T C G A C G A T A C T G G C A T C G A T T G A C T A G C G T C A A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

PH0085.1_Irx4/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GCAWGTWCCM--
AATATACATGTAAAACA
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C T C G A C G A T A C T G G C A T C G A T T G A C T A G C G T C A A C G T A C G T
C G T A C G T A G C A T C T G A C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G T C A C G T A C G T A A G T C C G T A

PH0084.1_Irx3_2/Jaspar

Match Rank:3
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GCAWGTWCCM-
NNTATTACATGTANNNT
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C T C G A C G A T A C T G G C A T C G A T T G A C T A G C G T C A A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0083.1_Irx3_1/Jaspar

Match Rank:4
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------GCAWGTWCCM-
ANTATTACATGTANNNN
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C T C G A C G A T A C T G G C A T C G A T T G A C T A G C G T C A A C G T
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCAWGTWCCM
AAGGCAAGTGT--
 A C G T A C G T A C G T C T A G A G T C T C G A C G A T A C T G G C A T C G A T T G A C T A G C G T C A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

USF2/MA0526.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCAWGTWCCM
GTCATGTGACC
 A C G T C T A G A G T C T C G A C G A T A C T G G C A T C G A T T G A C T A G C G T C A
T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C

PH0082.1_Irx2/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GCAWGTWCCM--
TAAATACATGTAAAATT
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C T C G A C G A T A C T G G C A T C G A T T G A C T A G C G T C A A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

HEY2/MA0649.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCAWGTWCCM
GGCACGTGNC-
 A C G T C T A G A G T C T C G A C G A T A C T G G C A T C G A T T G A C T A G C G T C A
A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCAWGTWCCM
GCACGTACCC
 C T A G A G T C T C G A C G A T A C T G G C A T C G A T T G A C T A G C G T C A
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

DMRT3/MA0610.1/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAWGTWCCM--
-AATGTATCAAT
 C T A G A G T C T C G A C G A T A C T G G C A T C G A T T G A C T A G C G T C A A C G T A C G T
A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T