Information for 6-TCTCAAWGCWTGCCMT (Motif 7)

A G C T G T A C A C G T A G T C C G T A C T G A C G T A A C T G G T A C G C T A C A G T A C T G A G T C A G T C G T A C A G C T
Reverse Opposite:
T C G A A C T G C T A G A C T G T G A C G C T A C G A T A C T G A G T C G C A T A G C T A C G T C T A G C G T A A C T G C T G A
p-value:1e-13
log p-value:-3.151e+01
Information Content per bp:1.731
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.2 +/- 25.9bp
Average Position of motif in Background44.7 +/- 12.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCTCAAWGCWTGCCMT
ACATCAAAGG-------
 A C G T A G C T G T A C A C G T A G T C C G T A C T G A C G T A A C T G G T A C G C T A C A G T A C T G A G T C A G T C G T A C A G C T
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TCTCAAWGCWTGCCMT
ACTATGAATGAATGAT--
 A C G T A C G T A G C T G T A C A C G T A G T C C G T A C T G A C G T A A C T G G T A C G C T A C A G T A C T G A G T C A G T C G T A C A G C T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:3
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TCTCAAWGCWTGCCMT
AAAGATCAAAGGAA-----
 A C G T A C G T A C G T A G C T G T A C A C G T A G T C C G T A C T G A C G T A A C T G G T A C G C T A C A G T A C T G A G T C A G T C G T A C A G C T
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T A C G T A C G T A C G T A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:4
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----TCTCAAWGCWTGCCMT
NNNAGATCAAAGGANNN---
 A C G T A C G T A C G T A C G T A G C T G T A C A C G T A G T C C G T A C T G A C G T A A C T G G T A C G C T A C A G T A C T G A G T C A G T C G T A C A G C T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T A C G T A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:5
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----TCTCAAWGCWTGCCMT
TATAGATCAAAGGAAAA---
 A C G T A C G T A C G T A C G T A G C T G T A C A C G T A G T C C G T A C T G A C G T A A C T G G T A C G C T A C A G T A C T G A G T C A G T C G T A C A G C T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:6
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TCTCAAWGCWTGCCMT
GNCTATAAAAGG-------
 A C G T A C G T A C G T A G C T G T A C A C G T A G T C C G T A C T G A C G T A A C T G G T A C G C T A C A G T A C T G A G T C A G T C G T A C A G C T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:TCTCAAWGCWTGCCMT
--ACAAAGGNBCCT--
 A G C T G T A C A C G T A G T C C G T A C T G A C G T A A C T G G T A C G C T A C A G T A C T G A G T C A G T C G T A C A G C T
A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TCTCAAWGCWTGCCMT
AAGTTCAAGGTCAGC---
 A C G T A C G T A G C T G T A C A C G T A G T C C G T A C T G A C G T A A C T G G T A C G C T A C A G T A C T G A G T C A G T C G T A C A G C T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TCTCAAWGCWTGCCMT
-NTCAAGGTCA-----
 A G C T G T A C A C G T A G T C C G T A C T G A C G T A A C T G G T A C G C T A C A G T A C T G A G T C A G T C G T A C A G C T
A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:10
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----TCTCAAWGCWTGCCMT
NANAGATCAAAGGGNNN---
 A C G T A C G T A C G T A C G T A G C T G T A C A C G T A G T C C G T A C T G A C G T A A C T G G T A C G C T A C A G T A C T G A G T C A G T C G T A C A G C T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T A C G T A C G T A C G T