Information for 3-AACTTGCCCT (Motif 3)

C G T A G T C A A T G C C G A T G A C T A C T G A G T C A G T C G T A C C G A T
Reverse Opposite:
C G T A A C T G A C T G C T A G G T A C C T G A C G T A A T C G C A G T C G A T
p-value:1e-28
log p-value:-6.551e+01
Information Content per bp:1.766
Number of Target Sequences with motif85.0
Percentage of Target Sequences with motif11.84%
Number of Background Sequences with motif1238.9
Percentage of Background Sequences with motif2.72%
Average Position of motif in Targets46.1 +/- 25.7bp
Average Position of motif in Background49.8 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AACTTGCCCT
NNACTTGCCTT
 A C G T C G T A G T C A A T G C C G A T G A C T A C T G A G T C A G T C G T A C C G A T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AACTTGCCCT--
---CTGCCCGCA
 C G T A G T C A A T G C C G A T G A C T A C T G A G T C A G T C G T A C C G A T A C G T A C G T
A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

Klf12/MA0742.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AACTTGCCCT----
GACCACGCCCTTATT
 A C G T C G T A G T C A A T G C C G A T G A C T A C T G A G T C A G T C G T A C C G A T A C G T A C G T A C G T A C G T
C A T G T C G A G T A C T A G C T G C A G T A C C T A G A G T C A G T C A G T C G C A T G C A T G C T A G C A T G C A T

PB0039.1_Klf7_1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AACTTGCCCT---
TCGACCCCGCCCCTAT
 A C G T A C G T A C G T C G T A G T C A A T G C C G A T G A C T A C T G A G T C A G T C G T A C C G A T A C G T A C G T A C G T
G A C T A G T C C T A G T C G A G T A C G T A C T G A C G A T C C T A G A G T C A G T C A G T C G A T C G A C T G C T A C G A T

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AACTTGCCCT--
---ATGCCCACC
 C G T A G T C A A T G C C G A T G A C T A C T G A G T C A G T C G T A C C G A T A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AACTTGCCCT--
----TGACCTYA
 C G T A G T C A A T G C C G A T G A C T A C T G A G T C A G T C G T A C C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AACTTGCCCT--
--BNTGDCCTTG
 C G T A G T C A A T G C C G A T G A C T A C T G A G T C A G T C G T A C C G A T A C G T A C G T
A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AACTTGCCCT
TGACCTTGACCT
 A C G T A C G T C G T A G T C A A T G C C G A T G A C T A C T G A G T C A G T C G T A C C G A T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AACTTGCCCT
AGCGCGCC--
 C G T A G T C A A T G C C G A T G A C T A C T G A G T C A G T C G T A C C G A T
T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T

KLF14/MA0740.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AACTTGCCCT---
GGCCACGCCCCCTT
 A C G T C G T A G T C A A T G C C G A T G A C T A C T G A G T C A G T C G T A C C G A T A C G T A C G T A C G T
C A T G T C A G G T A C A G T C T G C A G A T C T C A G A T G C A G T C A G T C G T A C G A T C G A C T G A C T