Information for 15-GGCVAGAAGAGGT (Motif 24)

A C T G A C T G A T G C T A C G C G T A A C T G G T C A C G T A A C T G C G T A A C T G A C T G A G C T
Reverse Opposite:
C T G A A G T C A G T C A C G T A G T C A C G T A C G T A G T C A C G T A G T C A T C G A G T C A G T C
p-value:1e-8
log p-value:-2.009e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.0 +/- 8.4bp
Average Position of motif in Background57.4 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGCVAGAAGAGGT--
GGTCANYTGAGGWCA
 A C T G A C T G A T G C T A C G C G T A A C T G G T C A C G T A A C T G C G T A A C T G A C T G A G C T A C G T A C G T
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GGCVAGAAGAGGT-----
TGGCCACCAGGGGGCGCTA
 A C G T A C T G A C T G A T G C T A C G C G T A A C T G G T C A C G T A A C T G C G T A A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGCVAGAAGAGGT--
AAGGTCACGAAAGGTCA
 A C G T A C G T A C T G A C T G A T G C T A C G C G T A A C T G G T C A C G T A A C T G C G T A A C T G A C T G A G C T A C G T A C G T
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGCVAGAAGAGGT------
TGGCCACCAGGTGGCACTNT
 A C G T A C T G A C T G A T G C T A C G C G T A A C T G G T C A C G T A A C T G C G T A A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GGCVAGAAGAGGT
----NGAAGC---
 A C T G A C T G A T G C T A C G C G T A A C T G G T C A C G T A A C T G C G T A A C T G A C T G A G C T
A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGCVAGAAGAGGT
CWGGCGGGAA-----
 A C G T A C G T A C T G A C T G A T G C T A C G C G T A A C T G G T C A C G T A A C T G C G T A A C T G A C T G A G C T
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GGCVAGAAGAGGT--------
-GCCASCAGGGGGCGCYVNNG
 A C T G A C T G A T G C T A C G C G T A A C T G G T C A C G T A A C T G C G T A A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GGCVAGAAGAGGT
TGGCGGGAAAHB--
 A C G T A C T G A C T G A T G C T A C G C G T A A C T G G T C A C G T A A C T G C G T A A C T G A C T G A G C T
C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G A C G T A C G T

E2F4/MA0470.1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GGCVAGAAGAGGT
GGGCGGGAAGG---
 A C G T A C T G A C T G A T G C T A C G C G T A A C T G G T C A C G T A A C T G C G T A A C T G A C T G A G C T
A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GGCVAGAAGAGGT
AAGGCAAGTGT----
 A C G T A C G T A C T G A C T G A T G C T A C G C G T A A C T G G T C A C G T A A C T G C G T A A C T G A C T G A G C T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T