Information for 5-CCGCGCTGCAGGGGCG (Motif 17)

A G T C A T G C A C T G A G T C A C T G A T G C A G C T A C T G A G T C C G T A T C A G A C T G A C T G A C T G A G T C A C T G
Reverse Opposite:
A G T C A C T G A G T C A G T C A G T C A G T C A C G T A C T G A G T C T C G A A T C G A G T C A C T G A G T C A T C G A C T G
p-value:1e-4
log p-value:-9.635e+00
Information Content per bp:1.933
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.34%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.2 +/- 25.4bp
Average Position of motif in Background79.0 +/- 17.3bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCGCGCTGCAGGGGCG-
--DCHCAGCAGGRGGCC
 A G T C A T G C A C T G A G T C A C T G A T G C A G C T A C T G A G T C C G T A T C A G A C T G A C T G A C T G A G T C A C T G A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0010.1_Egr1_1/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CCGCGCTGCAGGGGCG--
----ANTGCGGGGGCGGN
 A G T C A T G C A C T G A G T C A C T G A T G C A G C T A C T G A G T C C G T A T C A G A C T G A C T G A C T G A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCGCGCTGCAGGGGCG
---CACAGCAGGGGG-
 A G T C A T G C A C T G A G T C A C T G A T G C A G C T A C T G A G T C C G T A T C A G A C T G A C T G A C T G A G T C A C T G
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCGCGCTGCAGGGGCG-
--NCGCAGCGGGGGGTC
 A G T C A T G C A C T G A G T C A C T G A T G C A G C T A C T G A G T C C G T A T C A G A C T G A C T G A C T G A G T C A C T G A C G T
A C G T A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCGCGCTGCAGGGGCG
CCACACAGCAGGAGA-
 A G T C A T G C A C T G A G T C A C T G A T G C A G C T A C T G A G T C C G T A T C A G A C T G A C T G A C T G A G T C A C T G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

EGR3/MA0732.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CCGCGCTGCAGGGGCG---
----ANTGCGTGGGCGTNN
 A G T C A T G C A C T G A G T C A C T G A T G C A G C T A C T G A G T C C G T A T C A G A C T G A C T G A C T G A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T A G G A C T C T A G A G T C T A C G A C G T T C A G C T A G A T C G G A T C C T A G C A G T C T G A C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCGCGCTGCAGGGGCG
CCACACAGCAGGAGA-
 A G T C A T G C A C T G A G T C A C T G A T G C A G C T A C T G A G T C C G T A T C A G A C T G A C T G A C T G A G T C A C T G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCGCGCTGCAGGGGCG-
--NCNCAGCGGGGGGTC
 A G T C A T G C A C T G A G T C A C T G A T G C A G C T A C T G A G T C C G T A T C A G A C T G A C T G A C T G A G T C A C T G A C G T
A C G T A C G T C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

EGR2/MA0472.2/Jaspar

Match Rank:9
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CCGCGCTGCAGGGGCG-
------TGCGTGGGCGT
 A G T C A T G C A C T G A G T C A C T G A T G C A G C T A C T G A G T C C G T A T C A G A C T G A C T G A C T G A G T C A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T C A G G T A C T C A G A C G T T C A G A C T G T C A G G A T C T C A G C A G T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CCGCGCTGCAGGGGCG-----
-----NNTNAGGGGCGGNNNN
 A G T C A T G C A C T G A G T C A C T G A T G C A G C T A C T G A G T C C G T A T C A G A C T G A C T G A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T