Information for 3-AAGCCTAGAATAA (Motif 3)

G T C A C G T A A C T G A G T C A G T C A C G T C G T A T A C G C G T A C G T A A C G T C G T A C T G A
Reverse Opposite:
A G C T A C G T C G T A A C G T A C G T A G T C A C G T C G T A A C T G A C T G A G T C A C G T A C G T
p-value:1e-14
log p-value:-3.286e+01
Information Content per bp:1.914
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.5 +/- 25.7bp
Average Position of motif in Background42.4 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AAGCCTAGAATAA
---CCAAAAATAG
 G T C A C G T A A C T G A G T C A G T C A C G T C G T A T A C G C G T A C G T A A C G T C G T A C T G A
A C G T A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AAGCCTAGAATAA-
--KCCAAAAATAGC
 G T C A C G T A A C T G A G T C A G T C A C G T C G T A T A C G C G T A C G T A A C G T C G T A C T G A A C G T
A C G T A C G T A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

MEF2C/MA0497.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGCCTAGAATAA--
ATGCTAAAAATAGAA
 G T C A C G T A A C T G A G T C A G T C A C G T C G T A T A C G C G T A C G T A A C G T C G T A C T G A A C G T A C G T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

PB0186.1_Tcf3_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAGCCTAGAATAA---
-AGCCGAAAAAAAAAT
 G T C A C G T A A C T G A G T C A G T C A C G T C G T A T A C G C G T A C G T A A C G T C G T A C T G A A C G T A C G T A C G T
A C G T C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AAGCCTAGAATAA-
--GCTAAAAATAGC
 G T C A C G T A A C T G A G T C A G T C A C G T C G T A T A C G C G T A C G T A A C G T C G T A C T G A A C G T
A C G T A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAGCCTAGAATAA-
--DCYAAAAATAGM
 G T C A C G T A A C T G A G T C A G T C A C G T C G T A T A C G C G T A C G T A A C G T C G T A C T G A A C G T
A C G T A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C

ZNF410/MA0752.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAGCCTAGAATAA--
TCCATCCCATAATACTC
 A C G T A C G T G T C A C G T A A C T G A G T C A G T C A C G T C G T A T A C G C G T A C G T A A C G T C G T A C T G A A C G T A C G T
A C G T T G A C G A T C G C T A C A G T G T A C G T A C A T G C G T C A A G C T G T C A T C G A G A C T C T G A G T A C A G C T G T A C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAGCCTAGAATAA
AGGCCTAG-----
 G T C A C G T A A C T G A G T C A G T C A C G T C G T A T A C G C G T A C G T A A C G T C G T A C T G A
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAGCCTAGAATAA
AGGCCTNG-----
 G T C A C G T A A C T G A G T C A G T C A C G T C G T A T A C G C G T A C G T A A C G T C G T A C T G A
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AAGCCTAGAATAA
ATTTGCATACAATGG
 A C G T A C G T G T C A C G T A A C T G A G T C A G T C A C G T C G T A T A C G C G T A C G T A A C G T C G T A C T G A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G