Information for 3-AAAGCYACTAAGG (Motif 8)

C T G A G T C A G T C A A C T G A T G C G A T C C T G A G A T C C G A T G T C A G T C A T C A G T A C G
Reverse Opposite:
A G T C A G T C A C G T A C G T G C T A C A T G A G C T C T A G A T C G A G T C A C G T A C G T A G C T
p-value:1e-6
log p-value:-1.474e+01
Information Content per bp:1.684
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif4.65%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets22.5 +/- 16.5bp
Average Position of motif in Background81.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAAGCYACTAAGG---
ACAAGCAATTAATGAAT
 A C G T C T G A G T C A G T C A A C T G A T G C G A T C C T G A G A T C C G A T G T C A G T C A T C A G T A C G A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAAGCYACTAAGG---
ACAAGCAATTAATGAAT
 A C G T C T G A G T C A G T C A A C T G A T G C G A T C C T G A G A T C C G A T G T C A G T C A T C A G T A C G A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAAGCYACTAAGG
AAAAACCATTAAGG
 A C G T C T G A G T C A G T C A A C T G A T G C G A T C C T G A G A T C C G A T G T C A G T C A T C A G T A C G
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAAGCYACTAAGG---
AGAGCCATAAAATTCG
 C T G A G T C A G T C A A C T G A T G C G A T C C T G A G A T C C G A T G T C A G T C A T C A G T A C G A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Hmx2/MA0897.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAAGCYACTAAGG---
ACAAGCAATTAAAGAAT
 A C G T C T G A G T C A G T C A A C T G A T G C G A T C C T G A G A T C C G A T G T C A G T C A T C A G T A C G A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

PH0042.1_Hmx2/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAAGCYACTAAGG---
ACAAGCAATTAAAGAAT
 A C G T C T G A G T C A G T C A A C T G A T G C G A T C C T G A G A T C C G A T G T C A G T C A T C A G T A C G A C G T A C G T A C G T
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAAGCYACTAAGG
-AAGCCATAAAA-
 C T G A G T C A G T C A A C T G A T G C G A T C C T G A G A T C C G A T G T C A G T C A T C A G T A C G
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAAGCYACTAAGG---
ACAAGCAATTAAAGAAT
 A C G T C T G A G T C A G T C A A C T G A T G C G A T C C T G A G A T C C G A T G T C A G T C A T C A G T A C G A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0043.1_Hmx3/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAAGCYACTAAGG---
ACAAGCAATTAAAGAAT
 A C G T C T G A G T C A G T C A A C T G A T G C G A T C C T G A G A T C C G A T G T C A G T C A T C A G T A C G A C G T A C G T A C G T
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAAGCYACTAAGG-
AAAAACCAATTAAGAA
 A C G T A C G T C T G A G T C A G T C A A C T G A T G C G A T C C T G A G A T C C G A T G T C A G T C A T C A G T A C G A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A