Information for 9-GCAGGATCCTGCT (Motif 16)

A C T G A G T C C T G A A C T G A C T G C T G A G C A T A T G C G T A C A C G T A C T G A T G C A C G T
Reverse Opposite:
C G T A A T C G G T A C C G T A C A T G T A C G C G T A A G C T G T A C A G T C G A C T C T A G A G T C
p-value:1e-8
log p-value:-2.065e+01
Information Content per bp:1.783
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif5.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.4 +/- 25.7bp
Average Position of motif in Background46.0 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:1
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGATCCTGCT
ANCAGGATGT----
 A C G T A C T G A G T C C T G A A C T G A C T G C T G A G C A T A T G C G T A C A C G T A C T G A T G C A C G T
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T

Nfe2l2/MA0150.2/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGATCCTGCT-
TGCTGAGTCATNNTG
 A C G T A C T G A G T C C T G A A C T G A C T G C T G A G C A T A T G C G T A C A C G T A C T G A T G C A C G T A C G T
G C A T A T C G A T G C G A C T C T A G C G T A T A C G A C G T G T A C C G T A A G C T A C T G A T G C G A C T C A T G

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:3
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCAGGATCCTGCT-----
---AGATGCTRCTRCCHT
 A C T G A G T C C T G A A C T G A C T G C T G A G C A T A T G C G T A C A C G T A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCAGGATCCTGCT
NRRGGGTCTT---
 A C T G A G T C C T G A A C T G A C T G C T G A G C A T A T G C G T A C A C G T A C T G A T G C A C G T
A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GCAGGATCCTGCT------
----NNTCCTGCTGTGNNN
 A C T G A G T C C T G A A C T G A C T G C T G A G C A T A T G C G T A C A C G T A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GCAGGATCCTGCT
GGCGGGAARN----
 A C G T A C T G A G T C C T G A A C T G A C T G C T G A G C A T A T G C G T A C A C G T A C T G A T G C A C G T
T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T A C G T A C G T A C G T

E2F4/MA0470.1/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GCAGGATCCTGCT
GGGCGGGAAGG----
 A C G T A C G T A C T G A G T C C T G A A C T G A C T G C T G A G C A T A T G C G T A C A C G T A C T G A T G C A C G T
A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.50
Offset:7
Orientation:forward strand
Alignment:GCAGGATCCTGCT----
-------CCTGCTGAGH
 A C T G A G T C C T G A A C T G A C T G C T G A G C A T A T G C G T A C A C G T A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GCAGGATCCTGCT------
----TNTCCTGCTGTGNNG
 A C T G A G T C C T G A A C T G A C T G C T G A G C A T A T G C G T A C A C G T A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:10
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---GCAGGATCCTGCT
CWGGCGGGAA------
 A C G T A C G T A C G T A C T G A G T C C T G A A C T G A C T G C T G A G C A T A T G C G T A C A C G T A C T G A T G C A C G T
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T