Information for 6-ACTCGCTAAG (Motif 12)

T G C A T G A C G C A T A T G C A T C G T A G C G A C T T C G A C T G A A T C G
Reverse Opposite:
A T G C G A C T A G C T C T G A A T C G T A G C T A C G C G T A A C T G A C G T
p-value:1e-9
log p-value:-2.222e+01
Information Content per bp:1.670
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif4.79%
Number of Background Sequences with motif745.7
Percentage of Background Sequences with motif1.58%
Average Position of motif in Targets49.3 +/- 25.2bp
Average Position of motif in Background51.1 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ACTCGCTAAG-
-CCTGCTGAGH
 T G C A T G A C G C A T A T G C A T C G T A G C G A C T T C G A C T G A A T C G A C G T
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------ACTCGCTAAG-------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T T G C A T G A C G C A T A T G C A T C G T A G C G A C T T C G A C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--ACTCGCTAAG---
NNCGTTGCTATGGNN
 A C G T A C G T T G C A T G A C G C A T A T G C A T C G T A G C G A C T T C G A C T G A A T C G A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

HLTF/MA0109.1/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:ACTCGCTAAG---
---NNATAAGGNN
 T G C A T G A C G C A T A T G C A T C G T A G C G A C T T C G A C T G A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T G T C A G C A T C G T A C G T A A C T G A C T G C G A T G C A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ACTCGCTAAG---
NCCGTTGCTANGNGN
 A C G T A C G T T G C A T G A C G C A T A T G C A T C G T A G C G A C T T C G A C T G A A T C G A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0023.1_Gata6_1/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--ACTCGCTAAG-----
TATAGAGATAAGAATTG
 A C G T A C G T T G C A T G A C G C A T A T G C A T C G T A G C G A C T T C G A C T G A A T C G A C G T A C G T A C G T A C G T A C G T
C G A T G T C A C G A T T G C A C A G T G C T A A C T G C G T A A G C T C G T A C G T A A T C G T G C A C T G A C G A T G C A T T C A G

NKX3-2/MA0122.2/Jaspar

Match Rank:7
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:ACTCGCTAAG----
-----TTAAGTGGN
 T G C A T G A C G C A T A T G C A T C G T A G C G A C T T C G A C T G A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

PH0040.1_Hmbox1/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----ACTCGCTAAG---
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C G T T G C A T G A C G C A T A T G C A T C G T A G C G A C T T C G A C T G A A T C G A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.52
Offset:5
Orientation:forward strand
Alignment:ACTCGCTAAG---
-----CTAATKGV
 T G C A T G A C G C A T A T G C A T C G T A G C G A C T T C G A C T G A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:ACTCGCTAAG--------
-NTNNTTAAGTGGNTNAN
 T G C A T G A C G C A T A T G C A T C G T A G C G A C T T C G A C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G