Information for 2-CAGASAAAASATK (Motif 2)

A G T C C G T A A T C G C G T A A T G C C G T A C G T A C G T A C G T A A T C G C G T A A C G T A C G T
Reverse Opposite:
G T C A C G T A A C G T A T G C A C G T A C G T A C G T C G A T A T C G A C G T A T G C A C G T A C T G
p-value:1e-13
log p-value:-3.010e+01
Information Content per bp:1.884
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.3 +/- 18.0bp
Average Position of motif in Background51.4 +/- 10.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CAGASAAAASATK
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A G T C C G T A A T C G C G T A A T G C C G T A C G T A C G T A C G T A A T C G C G T A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAGASAAAASATK
AAAACAAAGG---
 A G T C C G T A A T C G C G T A A T G C C G T A C G T A C G T A C G T A A T C G C G T A A C G T A C G T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CAGASAAAASATK
CAAATCCAGACATCACA--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G C G T A A T G C C G T A C G T A C G T A C G T A A T C G C G T A A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T

GATA3/MA0037.2/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGASAAAASATK
-AGATAAGA----
 A G T C C G T A A T C G C G T A A T G C C G T A C G T A C G T A C G T A A T C G C G T A A C G T A C G T
A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGASAAAASATK
BCAGACWA------
 A C G T A G T C C G T A A T C G C G T A A T G C C G T A C G T A C G T A C G T A A T C G C G T A A C G T A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CAGASAAAASATK----
---GCAAAACATTACTA
 A G T C C G T A A T C G C G T A A T G C C G T A C G T A C G T A C G T A A T C G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

FOXA1/MA0148.3/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAGASAAAASATK--
CAAAGTAAACANNNN
 A G T C C G T A A T C G C G T A A T G C C G T A C G T A C G T A C G T A A T C G C G T A A C G T A C G T A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Foxa2/MA0047.2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGASAAAASATK
NCTAAGTAAACA--
 A C G T A G T C C G T A A T C G C G T A A T G C C G T A C G T A C G T A C G T A A T C G C G T A A C G T A C G T
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CAGASAAAASATK
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T A G T C C G T A A T C G C G T A A T G C C G T A C G T A C G T A C G T A A T C G C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CAGASAAAASATK
TGCCAAAATAAACANN
 A C G T A C G T A C G T A G T C C G T A A T C G C G T A A T G C C G T A C G T A C G T A C G T A A T C G C G T A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A