Information for 2-GCCCTGCTAA (Motif 6)

A T C G G T A C G A T C A T G C C G A T A T C G A T G C G C A T T C G A G T C A
Reverse Opposite:
C A G T A G C T C G T A A T C G T A G C G C T A T A C G C T A G C A T G T A G C
p-value:1e-13
log p-value:-3.001e+01
Information Content per bp:1.685
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif8.36%
Number of Background Sequences with motif1497.5
Percentage of Background Sequences with motif3.12%
Average Position of motif in Targets42.7 +/- 24.9bp
Average Position of motif in Background50.6 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTGCTAA-
CCCCCTGCTGTG
 A C G T A T C G G T A C G A T C A T G C C G A T A T C G A T G C G C A T T C G A G T C A A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCCCTGCTAA--
--CCTGCTGAGH
 A T C G G T A C G A T C A T G C C G A T A T C G A T G C G C A T T C G A G T C A A C G T A C G T
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTGCTAA
TGCCCAGNHW-
 A C G T A T C G G T A C G A T C A T G C C G A T A T C G A T G C G C A T T C G A G T C A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCCCTGCTAA--
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A T C G G T A C G A T C A T G C C G A T A T C G A T G C G C A T T C G A G T C A A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCCCTGCTAA--
--GGTGCCAAGT
 A T C G G T A C G A T C A T G C C G A T A T C G A T G C G C A T T C G A G T C A A C G T A C G T
A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTGCTAA----
TNTCCTGCTGTGNNG
 A C G T A T C G G T A C G A T C A T G C C G A T A T C G A T G C G C A T T C G A G T C A A C G T A C G T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCCCTGCTAA----
----TGCTGACTCA
 A T C G G T A C G A T C A T G C C G A T A T C G A T G C G C A T T C G A G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTGCTAA----
TCNCCTGCTGNGNNN
 A C G T A T C G G T A C G A T C A T G C C G A T A T C G A T G C G C A T T C G A G T C A A C G T A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTGCTAA----
NNTCCTGCTGTGNNN
 A C G T A T C G G T A C G A T C A T G C C G A T A T C G A T G C G C A T T C G A G T C A A C G T A C G T A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GCCCTGCTAA
SNGCACCTGCHS-
 A C G T A C G T A C G T A T C G G T A C G A T C A T G C C G A T A T C G A T G C G C A T T C G A G T C A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T