Information for 25-CTAGTGCACA (Motif 46)

A T G C G A C T C T G A T A C G C A G T A T C G T A G C G T C A T A G C G T C A
Reverse Opposite:
C A G T A T C G C A G T A T C G T A G C G T C A A T G C G A C T C T G A T A C G
p-value:1e-6
log p-value:-1.443e+01
Information Content per bp:1.447
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets62.8 +/- 12.7bp
Average Position of motif in Background55.0 +/- 6.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CTAGTGCACA-----
TACATGTGCACATAAAA
 A C G T A C G T A T G C G A C T C T G A T A C G C A G T A T C G T A G C G T C A T A G C G T C A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CTAGTGCACA-----
CAGATGTGCACATACGT
 A C G T A C G T A T G C G A C T C T G A T A C G C A G T A T C G T A G C G T C A T A G C G T C A A C G T A C G T A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTAGTGCACA----
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A T G C G A C T C T G A T A C G C A G T A T C G T A G C G T C A T A G C G T C A A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTAGTGCACA------
NNTTTGCACACGGCCC
 A T G C G A C T C T G A T A C G C A G T A T C G T A G C G T C A T A G C G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTAGTGCACA-----
GGGTGTGCCCAAAAGG
 A C G T A T G C G A C T C T G A T A C G C A G T A T C G T A G C G T C A T A G C G T C A A C G T A C G T A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTAGTGCACA--
---ATGCCCACC
 A T G C G A C T C T G A T A C G C A G T A T C G T A G C G T C A T A G C G T C A A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTAGTGCACA--
SSAATCCACANN
 A T G C G A C T C T G A T A C G C A G T A T C G T A G C G T C A T A G C G T C A A C G T A C G T
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

MTF1/MA0863.1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CTAGTGCACA
GTGCCGTGTGCAAA
 A C G T A C G T A C G T A C G T A T G C G A C T C T G A T A C G C A G T A T C G T A G C G T C A T A G C G T C A
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

CEBPA/MA0102.3/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTAGTGCACA---
--ATTGCACAATA
 A T G C G A C T C T G A T A C G C A G T A T C G T A G C G T C A T A G C G T C A A C G T A C G T A C G T
A C G T A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

FOXH1/MA0479.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTAGTGCACA
TCCAATCCACA
 A C G T A T G C G A C T C T G A T A C G C A G T A T C G T A G C G T C A T A G C G T C A
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A