Information for 2-TGGCCRGAGAGGT (Motif 3)

A C G T A C T G C T A G A G T C G A T C C T G A A T C G C G T A A T C G C T G A A C T G A C T G A C G T
Reverse Opposite:
G T C A T A G C G T A C A G C T A T G C C G A T A T G C A G C T C A T G A C T G A G T C A G T C C G T A
p-value:1e-15
log p-value:-3.529e+01
Information Content per bp:1.809
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif16.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets42.4 +/- 22.8bp
Average Position of motif in Background58.5 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGGCCRGAGAGGT
TTGGCA--------
 A C G T A C G T A C T G C T A G A G T C G A T C C T G A A T C G C G T A A T C G C T G A A C T G A C T G A C G T
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGGCCRGAGAGGT
NTTGGCANN------
 A C G T A C G T A C G T A C T G C T A G A G T C G A T C C T G A A T C G C G T A A T C G C T G A A C T G A C T G A C G T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

E2F8/MA0865.1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGGCCRGAGAGGT
TTTGGCGGGAAA---
 A C G T A C G T A C G T A C T G C T A G A G T C G A T C C T G A A T C G C G T A A T C G C T G A A C T G A C T G A C G T
C G A T A C G T A G C T A T C G C T A G A T G C A T C G C T A G C T A G G T C A C T G A C G T A A C G T A C G T A C G T

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGGCCRGAGAGGT
TGGCGGGAAAHB-
 A C G T A C T G C T A G A G T C G A T C C T G A A T C G C G T A A T C G C T G A A C T G A C T G A C G T
C G A T T A C G A T C G G T A C A C T G A T C G A C T G C T G A C T G A T G C A G C T A A T C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGGCCRGAGAGGT
TTGCCAAG------
 A C G T A C G T A C T G C T A G A G T C G A T C C T G A A T C G C G T A A T C G C T G A A C T G A C T G A C G T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

E2F4/MA0470.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TGGCCRGAGAGGT
GGGCGGGAAGG--
 A C G T A C T G C T A G A G T C G A T C C T G A A T C G C G T A A T C G C T G A A C T G A C T G A C G T
A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TGGCCRGAGAGGT-
---CTTGAGTGGCT
 A C G T A C T G C T A G A G T C G A T C C T G A A T C G C G T A A T C G C T G A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

E2F7/MA0758.1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TGGCCRGAGAGGT
TTTTGGCGGGAAAA--
 A C G T A C G T A C G T A C G T A C T G C T A G A G T C G A T C C T G A A T C G C G T A A T C G C T G A A C T G A C T G A C G T
C G A T C G A T G C A T C G A T T A C G A C T G A G T C A C T G A T C G A T C G C T G A C T G A G C T A G C T A A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGGCCRGAGAGGT
GTGGCGTGACNG--
 A C G T A C G T A C T G C T A G A G T C G A T C C T G A A T C G C G T A A T C G C T G A A C T G A C T G A C G T
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----TGGCCRGAGAGGT
TGATTGGCTANN-----
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G A G T C G A T C C T G A A T C G C G T A A T C G C T G A A C T G A C T G A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T A C G T A C G T