Information for 1-GCGTCCTTTG (Motif 8)

A C T G A G T C A T C G A C G T A T G C A T G C A G C T A G C T C G A T A T C G
Reverse Opposite:
A T G C C G T A C T G A C T G A A T C G A T C G G T C A T A G C A C T G A G T C
p-value:1e-10
log p-value:-2.375e+01
Information Content per bp:1.873
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif42.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets60.5 +/- 25.5bp
Average Position of motif in Background45.8 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GCGTCCTTTG--
----CCTTTGTT
 A C T G A G T C A T C G A C G T A T G C A T G C A G C T A G C T C G A T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCGTCCTTTG-
AGGVNCCTTTGT
 A C G T A C T G A G T C A T C G A C G T A T G C A T G C A G C T A G C T C G A T A T C G A C G T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GCGTCCTTTG--
----CCWTTGTY
 A C T G A G T C A T C G A C G T A T G C A T G C A G C T A G C T C G A T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GCGTCCTTTG----
----CCTTTGTTTT
 A C T G A G T C A T C G A C G T A T G C A T G C A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCGTCCTTTG-------
NNNTCCTTTGTTCTNNN
 A C T G A G T C A T C G A C G T A T G C A T G C A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:6
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GCGTCCTTTG----
----CCTTTGAWGT
 A C T G A G T C A T C G A C G T A T G C A T G C A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GCGTCCTTTG----
----CCTTTGATGT
 A C T G A G T C A T C G A C G T A T G C A T G C A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCGTCCTTTG-------
TNNTCCTTTGTTCTNNT
 A C T G A G T C A T C G A C G T A T G C A T G C A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCGTCCTTTG-------
ATTTCCTTTGATCTATA
 A C T G A G T C A T C G A C G T A T G C A T G C A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A

PB0083.1_Tcf7_1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCGTCCTTTG-------
NNTTCCTTTGATCTNNA
 A C T G A G T C A T C G A C G T A T G C A T G C A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C A G T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G C A