Information for 5-SCCACARAAYCYYYTT (Motif 8)

T A C G A G T C A G T C C G T A A T G C C G T A C T G A C G T A C T G A A G C T A G T C A G T C A G C T A G T C G A C T A C G T
Reverse Opposite:
C G T A C G T A C T A G C T G A C T A G C T A G C T G A A G C T A C G T A G C T A C G T A T C G A C G T A C T G A C T G A T G C
p-value:1e-11
log p-value:-2.717e+01
Information Content per bp:1.840
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.2 +/- 16.6bp
Average Position of motif in Background14.1 +/- 8.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--SCCACARAAYCYYYTT
AAACCACAGAN-------
 A C G T A C G T T A C G A G T C A G T C C G T A A T G C C G T A C T G A C G T A C T G A A G C T A G T C A G T C A G C T A G T C G A C T A C G T
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---SCCACARAAYCYYYTT
NWAACCACADNN-------
 A C G T A C G T A C G T T A C G A G T C A G T C C G T A A T G C C G T A C T G A C G T A C T G A A G C T A G T C A G T C A G C T A G T C G A C T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:SCCACARAAYCYYYTT
---ACAAAGGNBCCT-
 T A C G A G T C A G T C C G T A A T G C C G T A C T G A C G T A C T G A A G C T A G T C A G T C A G C T A G T C G A C T A C G T
A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--SCCACARAAYCYYYTT
AAACCACANN--------
 A C G T A C G T T A C G A G T C A G T C C G T A A T G C C G T A C T G A C G T A C T G A A G C T A G T C A G T C A G C T A G T C G A C T A C G T
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--SCCACARAAYCYYYTT
AAACCACAGC--------
 A C G T A C G T T A C G A G T C A G T C C G T A A T G C C G T A C T G A C G T A C T G A A G C T A G T C A G T C A G C T A G T C G A C T A C G T
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---SCCACARAAYCYYYTT
NAAACCACAG---------
 A C G T A C G T A C G T T A C G A G T C A G T C C G T A A T G C C G T A C T G A C G T A C T G A A G C T A G T C A G T C A G C T A G T C G A C T A C G T
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--SCCACARAAYCYYYTT
AAGCCATAAAA-------
 A C G T A C G T T A C G A G T C A G T C C G T A A T G C C G T A C T G A C G T A C T G A A G C T A G T C A G T C A G C T A G T C G A C T A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---SCCACARAAYCYYYTT
AGAGCCATAAAATTCG---
 A C G T A C G T A C G T T A C G A G T C A G T C C G T A A T G C C G T A C T G A C G T A C T G A A G C T A G T C A G T C A G C T A G T C G A C T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T A C G T A C G T

RUNX3/MA0684.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--SCCACARAAYCYYYTT
AAACCGCAAA--------
 A C G T A C G T T A C G A G T C A G T C C G T A A T G C C G T A C T G A C G T A C T G A A G C T A G T C A G T C A G C T A G T C G A C T A C G T
G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:SCCACARAAYCYYYTT
-----CTAATCCTCTT
 T A C G A G T C A G T C C G T A A T G C C G T A C T G A C G T A C T G A A G C T A G T C A G T C A G C T A G T C G A C T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T