Information for 20-CAGCCAGAAGCTTGVC (Motif 42)

A G T C G T C A A C T G G A T C G T A C G T C A A C T G G T C A G T C A A C T G A G T C C G A T A C G T A C T G T C G A A T G C
Reverse Opposite:
A T C G A C G T A G T C G T C A G C T A A C T G A G T C A C G T A C G T A G T C A C G T A C T G C T A G A G T C A C G T A C T G
p-value:1e-6
log p-value:-1.530e+01
Information Content per bp:1.786
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets32.2 +/- 20.6bp
Average Position of motif in Background59.5 +/- 22.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:CAGCCAGAAGCTTGVC
-------AAGCTTG--
 A G T C G T C A A C T G G A T C G T A C G T C A A C T G G T C A G T C A A C T G A G T C C G A T A C G T A C T G T C G A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:2
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAGCCAGAAGCTTGVC
-AGCCTCAGGCA----
 A G T C G T C A A C T G G A T C G T A C G T C A A C T G G T C A G T C A A C T G A G T C C G A T A C G T A C T G T C G A A T G C
A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAGCCAGAAGCTTGVC
-CGCCTCAGGCA----
 A G T C G T C A A C T G G A T C G T A C G T C A A C T G G T C A G T C A A C T G A G T C C G A T A C G T A C T G T C G A A T G C
A C G T G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CAGCCAGAAGCTTGVC--
----NNGTCGCGTGNCAC
 A G T C G T C A A C T G G A T C G T A C G T C A A C T G G T C A G T C A A C T G A G T C C G A T A C G T A C T G T C G A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CAGCCAGAAGCTTGVC
-----NGAAGC-----
 A G T C G T C A A C T G G A T C G T A C G T C A A C T G G T C A G T C A A C T G A G T C C G A T A C G T A C T G T C G A A T G C
A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CAGCCAGAAGCTTGVC
-AGCCTCAGGCA----
 A G T C G T C A A C T G G A T C G T A C G T C A A C T G G T C A G T C A A C T G A G T C C G A T A C G T A C T G T C G A A T G C
A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CAGCCAGAAGCTTGVC
----CAGCTGNT----
 A G T C G T C A A C T G G A T C G T A C G T C A A C T G G T C A G T C A A C T G A G T C C G A T A C G T A C T G T C G A A T G C
A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAGAAGCTTGVC--
SMCAGTCWGAKGGAGGAGGC
 A C G T A C G T A G T C G T C A A C T G G A T C G T A C G T C A A C T G G T C A G T C A A C T G A G T C C G A T A C G T A C T G T C G A A T G C A C G T A C G T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAGAAGCTTGVC
CCAGACAG---------
 A C G T A G T C G T C A A C T G G A T C G T A C G T C A A C T G G T C A G T C A A C T G A G T C C G A T A C G T A C T G T C G A A T G C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CAGCCAGAAGCTTGVC
ATGCCAGACN------
 A G T C G T C A A C T G G A T C G T A C G T C A A C T G G T C A G T C A A C T G A G T C C G A T A C G T A C T G T C G A A T G C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T