Information for 23-CCAGGGCTTCCTY (Motif 41)

A T G C A G T C G T C A A T C G C T A G A T C G A G T C A C G T G C A T A T G C A G T C C G A T A G T C
Reverse Opposite:
T C A G C G T A C T A G A T C G C G T A G T C A C T A G A T G C A G T C A T G C C A G T A C T G A T C G
p-value:1e-6
log p-value:-1.553e+01
Information Content per bp:1.818
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif65.4
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets46.2 +/- 24.9bp
Average Position of motif in Background47.8 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCAGGGCTTCCTY
TGCCTGCGYCMCCTT
 A C G T A C G T A T G C A G T C G T C A A T C G C T A G A T C G A G T C A C G T G C A T A T G C A G T C C G A T A G T C
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCAGGGCTTCCTY
TTGCCATGGCAACN--
 A C G T A C G T A C G T A T G C A G T C G T C A A T C G C T A G A T C G A G T C A C G T G C A T A T G C A G T C C G A T A G T C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CCAGGGCTTCCTY
----GGCGCGCT-
 A T G C A G T C G T C A A T C G C T A G A T C G A G T C A C G T G C A T A T G C A G T C C G A T A G T C
A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCAGGGCTTCCTY
ATGCCCGGGCATGT--
 A C G T A C G T A C G T A T G C A G T C G T C A A T C G C T A G A T C G A G T C A C G T G C A T A T G C A G T C C G A T A G T C
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCAGGGCTTCCTY
WDNCTGGGCA-----
 A C G T A C G T A T G C A G T C G T C A A T C G C T A G A T C G A G T C A C G T G C A T A T G C A G T C C G A T A G T C
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCAGGGCTTCCTY
TTGCCATGGCAACC--
 A C G T A C G T A C G T A T G C A G T C G T C A A T C G C T A G A T C G A G T C A C G T G C A T A T G C A G T C C G A T A G T C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGGCTTCCTY--
NNNGGGGCGCCCCCNN
 A C G T A T G C A G T C G T C A A T C G C T A G A T C G A G T C A C G T G C A T A T G C A G T C C G A T A G T C A C G T A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCAGGGCTTCCTY
GTTGCCATGGCAACM--
 A C G T A C G T A C G T A C G T A T G C A G T C G T C A A T C G C T A G A T C G A G T C A C G T G C A T A T G C A G T C C G A T A G T C
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCAGGGCTTCCTY
CTAGGCCT-----
 A T G C A G T C G T C A A T C G C T A G A T C G A G T C A C G T G C A T A T G C A G T C C G A T A G T C
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----CCAGGGCTTCCTY
GTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A T G C A G T C G T C A A T C G C T A G A T C G A G T C A C G T G C A T A T G C A G T C C G A T A G T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T