Information for 5-CACATATCAGACT (Motif 20)

A T G C G C T A A G T C C G T A A G C T G C T A C G A T T G A C C G T A T A C G G T C A A G T C C A G T
Reverse Opposite:
G C T A T A C G C A G T A G T C C G A T A C T G C G T A C A G T C T G A G A C T T C A G C A G T A T C G
p-value:1e-10
log p-value:-2.317e+01
Information Content per bp:1.668
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.64%
Number of Background Sequences with motif639.2
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets47.8 +/- 25.2bp
Average Position of motif in Background50.1 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0105.1_Arid3a_2/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CACATATCAGACT-
ACCCGTATCAAATTT
 A C G T A T G C G C T A A G T C C G T A A G C T G C T A C G A T T G A C C G T A T A C G G T C A A G T C C A G T A C G T
G T C A G T A C T G A C T A G C T C A G A G C T T C G A A G C T T A G C C T G A C G T A T C G A C G A T G A C T C A G T

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CACATATCAGACT
GACAGAGATATCAGTGT
 A C G T A C G T A C G T A C G T A T G C G C T A A G T C C G T A A G C T G C T A C G A T T G A C C G T A T A C G G T C A A G T C C A G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CACATATCAGACT-
NTNTTCTTATCAGTNTN
 A C G T A C G T A C G T A T G C G C T A A G T C C G T A A G C T G C T A C G A T T G A C C G T A T A C G G T C A A G T C C A G T A C G T
G C T A G C A T G T A C A G C T A G C T A T G C C G A T C G A T C G T A A C G T A G T C C G T A T C A G G A C T G C A T G C A T C G T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CACATATCAGACT-
------BCAGACWA
 A T G C G C T A A G T C C G T A A G C T G C T A C G A T T G A C C G T A T A C G G T C A A G T C C A G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CACATATCAGACT---
TCACCCATCAATAAACA
 A C G T A T G C G C T A A G T C C G T A A G C T G C T A C G A T T G A C C G T A T A C G G T C A A G T C C A G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

GATA3/MA0037.2/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CACATATCAGACT
---AGATAAGA--
 A T G C G C T A A G T C C G T A A G C T G C T A C G A T T G A C C G T A T A C G G T C A A G T C C A G T
A C G T A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CACATATCAGACT
-ANAGATAAGAA-
 A T G C G C T A A G T C C G T A A G C T G C T A C G A T T G A C C G T A T A C G G T C A A G T C C A G T
A C G T C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T

POL002.1_INR/Jaspar

Match Rank:8
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CACATATCAGACT-
------TCAGTCTT
 A T G C G C T A A G T C C G T A A G C T G C T A C G A T T G A C C G T A T A C G G T C A A G T C C A G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

Hoxa9/MA0594.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CACATATCAGACT
GCCATAAATCA----
 A C G T A C G T A T G C G C T A A G T C C G T A A G C T G C T A C G A T T G A C C G T A T A C G G T C A A G T C C A G T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T

GATA2/MA0036.2/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CACATATCAGACT--
-NCAGATAAGAANNN
 A T G C G C T A A G T C C G T A A G C T G C T A C G A T T G A C C G T A T A C G G T C A A G T C C A G T A C G T A C G T
A C G T C G T A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A C G T A G A C T G A T C G C A T