Information for 14-RCAGGCTGGGGCGATK (Motif 18)

T C G A A G T C G T C A A C T G A C T G A T G C A G C T A C T G A C T G C A T G A T C G A G T C C T A G C T G A A G C T A C T G
Reverse Opposite:
G T A C C T G A G A C T A G T C C T A G A T G C G A T C A G T C A G T C C T G A A T C G G T A C A G T C A C G T A C T G A G C T
p-value:1e-10
log p-value:-2.385e+01
Information Content per bp:1.753
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.7 +/- 31.0bp
Average Position of motif in Background47.4 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:RCAGGCTGGGGCGATK
-CTGTCTGG-------
 T C G A A G T C G T C A A C T G A C T G A T G C A G C T A C T G A C T G C A T G A T C G A G T C C T A G C T G A A G C T A C T G
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:RCAGGCTGGGGCGATK
-CAGGCCNNGGCCNN-
 T C G A A G T C G T C A A C T G A C T G A T G C A G C T A C T G A C T G C A T G A T C G A G T C C T A G C T G A A G C T A C T G
A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RCAGGCTGGGGCGATK
-TWGTCTGV-------
 T C G A A G T C G T C A A C T G A C T G A T G C A G C T A C T G A C T G C A T G A T C G A G T C C T A G C T G A A G C T A C T G
A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-RCAGGCTGGGGCGATK
NNVDGGGYGGGGCYN--
 A C G T T C G A A G T C G T C A A C T G A C T G A T G C A G C T A C T G A C T G C A T G A T C G A G T C C T A G C T G A A G C T A C T G
T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A A C G T A C G T

Klf4/MA0039.2/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:RCAGGCTGGGGCGATK
--TGGGTGGGGC----
 T C G A A G T C G T C A A C T G A C T G A T G C A G C T A C T G A C T G C A T G A T C G A G T C C T A G C T G A A G C T A C T G
A C G T A C G T C G A T T C A G C T A G A T C G G A C T C A T G A C T G C T A G A C T G A G T C A C G T A C G T A C G T A C G T

KLF5/MA0599.1/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:RCAGGCTGGGGCGATK
--GGGGNGGGGC----
 T C G A A G T C G T C A A C T G A C T G A T G C A G C T A C T G A C T G C A T G A T C G A G T C C T A G C T G A A G C T A C T G
A C G T A C G T C T A G C T A G A C T G A C T G G A T C A C T G C A T G C T A G C T A G T G A C A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-RCAGGCTGGGGCGATK
VBSYGTCTGG-------
 A C G T T C G A A G T C G T C A A C T G A C T G A T G C A G C T A C T G A C T G C A T G A T C G A G T C C T A G C T G A A G C T A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:RCAGGCTGGGGCGATK
ACATGCCCGGGCAT--
 T C G A A G T C G T C A A C T G A C T G A T G C A G C T A C T G A C T G C A T G A T C G A G T C C T A G C T G A A G C T A C T G
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:RCAGGCTGGGGCGATK
-CCTGCTGAGH-----
 T C G A A G T C G T C A A C T G A C T G A T G C A G C T A C T G A C T G C A T G A T C G A G T C C T A G C T G A A G C T A C T G
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:RCAGGCTGGGGCGATK
--DGGGYGKGGC----
 T C G A A G T C G T C A A C T G A C T G A T G C A G C T A C T G A C T G C A T G A T C G A G T C C T A G C T G A A G C T A C T G
A C G T A C G T C G T A C T A G A C T G A C T G G A C T C T A G C A G T C T A G C A T G G A T C A C G T A C G T A C G T A C G T