Information for 6-TTTACTCACTAAAGCA (Motif 5)

A G C T A C G T G C A T C G T A A T G C G C A T A G T C C G T A A T G C A C G T C G T A T G C A C G T A A C T G A T G C C G T A
Reverse Opposite:
C G A T A T C G G T A C A C G T A C G T G A C T T C G A A T C G A C G T A C T G C G T A T A C G C G A T C G T A T C G A T C G A
p-value:1e-13
log p-value:-3.186e+01
Information Content per bp:1.710
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.2 +/- 25.1bp
Average Position of motif in Background35.0 +/- 17.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTTACTCACTAAAGCA-
CTTAACCACTTAAGGAT
 A G C T A C G T G C A T C G T A A T G C G C A T A G T C C G T A A T G C A C G T C G T A T G C A C G T A A C T G A T G C C G T A A C G T
G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTTACTCACTAAAGCA-
CATAACCACTTAACAAC
 A G C T A C G T G C A T C G T A A T G C G C A T A G T C C G T A A T G C A C G T C G T A T G C A C G T A A C T G A T G C C G T A A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PH0115.1_Nkx2-6/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TTTACTCACTAAAGCA-
-TAAGCCACTTAACATT
 A G C T A C G T G C A T C G T A A T G C G C A T A G T C C G T A A T G C A C G T C G T A T G C A C G T A A C T G A T G C C G T A A C G T
A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TTTACTCACTAAAGCA
---MRSCACTYAA---
 A G C T A C G T G C A T C G T A A T G C G C A T A G T C C G T A A T G C A C G T C G T A T G C A C G T A A C T G A T G C C G T A
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TTTACTCACTAAAGCA
-TAATTCAATGAAGTG
 A G C T A C G T G C A T C G T A A T G C G C A T A G T C C G T A A T G C A C G T C G T A T G C A C G T A A C T G A T G C C G T A
A C G T G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:TTTACTCACTAAAGCA
---AGCCACTCAAG--
 A G C T A C G T G C A T C G T A A T G C G C A T A G T C C G T A A T G C A C G T C G T A T G C A C G T A A C T G A T G C C G T A
A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

FOSL1/MA0477.1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TTTACTCACTAAAGCA
NATGAGTCACC------
 A C G T A G C T A C G T G C A T C G T A A T G C G C A T A G T C C G T A A T G C A C G T C G T A T G C A C G T A A C T G A T G C C G T A
A T G C T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TTTACTCACTAAAGCA
----ACCACTTAA---
 A G C T A C G T G C A T C G T A A T G C G C A T A G T C C G T A A T G C A C G T C G T A T G C A C G T A A C T G A T G C C G T A
A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TTTACTCACTAAAGCA----
NGTGTTCAVTSAAGCGKAAA
 A G C T A C G T G C A T C G T A A T G C G C A T A G T C C G T A A T G C A C G T C G T A T G C A C G T A A C T G A T G C C G T A A C G T A C G T A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TTTACTCACTAAAGCA
----NSCACTYVAV--
 A G C T A C G T G C A T C G T A A T G C G C A T A G T C C G T A A T G C A C G T C G T A T G C A C G T A A C T G A T G C C G T A
A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T