Information for 4-GTRAACAWAGCAAACA (Motif 3)

T A C G A C G T C T G A G C T A C G T A A G T C C G T A C G T A C G T A A C T G A T G C C G T A G T C A C G T A A G T C C G T A
Reverse Opposite:
A C G T C T A G C G A T A C G T A C G T A T C G A G T C C G A T C G A T A C G T C T A G A C G T C G A T A G C T C G T A A T G C
p-value:1e-16
log p-value:-3.878e+01
Information Content per bp:1.735
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.6 +/- 26.3bp
Average Position of motif in Background52.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:1
Score:0.62
Offset:6
Orientation:forward strand
Alignment:GTRAACAWAGCAAACA
------AAAGTAAACA
 T A C G A C G T C T G A G C T A C G T A A G T C C G T A C G T A C G T A A C T G A T G C C G T A G T C A C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.62
Offset:6
Orientation:forward strand
Alignment:GTRAACAWAGCAAACA
------AAAGTAAACA
 T A C G A C G T C T G A G C T A C G T A A G T C C G T A C G T A C G T A A C T G A T G C C G T A G T C A C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GTRAACAWAGCAAACA
AAACAGACAAAGGAAT--
 A C G T A C G T T A C G A C G T C T G A G C T A C G T A A G T C C G T A C G T A C G T A A C T G A T G C C G T A G T C A C G T A A G T C C G T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GTRAACAWAGCAAACA----
-----CAAAGTAAACANNNN
 T A C G A C G T C T G A G C T A C G T A A G T C C G T A C G T A C G T A A C T G A T G C C G T A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Foxj3/MA0851.1/Jaspar

Match Rank:5
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GTRAACAWAGCAAACA
AAAAAGTAAACAAACAC----
 A C G T A C G T A C G T A C G T A C G T T A C G A C G T C T G A G C T A C G T A A G T C C G T A C G T A C G T A A C T G A T G C C G T A G T C A C G T A A G T C C G T A
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C A C G T A C G T A C G T A C G T

PB0017.1_Foxj3_1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GTRAACAWAGCAAACA
AAAAAGTAAACAAACAC----
 A C G T A C G T A C G T A C G T A C G T T A C G A C G T C T G A G C T A C G T A A G T C C G T A C G T A C G T A A C T G A T G C C G T A G T C A C G T A A G T C C G T A
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C A C G T A C G T A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:7
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:GTRAACAWAGCAAACA
------WAAGTAAAYA
 T A C G A C G T C T G A G C T A C G T A A G T C C G T A C G T A C G T A A C T G A T G C C G T A G T C A C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

PB0015.1_Foxa2_1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GTRAACAWAGCAAACA
AAAAAGTAAACAAAGAC----
 A C G T A C G T A C G T A C G T A C G T T A C G A C G T C T G A G C T A C G T A A G T C C G T A C G T A C G T A A C T G A T G C C G T A G T C A C G T A A G T C C G T A
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C A C G T A C G T A C G T A C G T

FOXP1/MA0481.1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GTRAACAWAGCAAACA
CAAAAGTAAACAAAG------
 A C G T A C G T A C G T A C G T A C G T T A C G A C G T C T G A G C T A C G T A A G T C C G T A C G T A C G T A A C T G A T G C C G T A G T C A C G T A A G T C C G T A
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTRAACAWAGCAAACA
AAAGTAAACAAAAATT---
 A C G T A C G T A C G T T A C G A C G T C T G A G C T A C G T A A G T C C G T A C G T A C G T A A C T G A T G C C G T A G T C A C G T A A G T C C G T A
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T A C G T A C G T A C G T