Information for 6-SCAATCACCTACTGAT (Motif 5)

A T C G A G T C C G T A C G T A C A G T A G T C G T C A A G T C A G T C C G A T C T G A A G T C C G A T A C T G C T G A A C G T
Reverse Opposite:
G T C A G A C T A G T C C G T A C T A G A G C T C G T A A C T G T C A G A C G T A C T G G C T A C G A T A C G T A C T G T A G C
p-value:1e-14
log p-value:-3.366e+01
Information Content per bp:1.732
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.9 +/- 17.2bp
Average Position of motif in Background81.7 +/- 4.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP4/MA0691.1/Jaspar

Match Rank:1
Score:0.62
Offset:6
Orientation:forward strand
Alignment:SCAATCACCTACTGAT
------AACAGCTGAT
 A T C G A G T C C G T A C G T A C A G T A G T C G T C A A G T C A G T C C G A T C T G A A G T C C G A T A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C T A A G T C G T C A A T C G T A G C G A C T A T C G C G T A A G C T

SCRT1/MA0743.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:SCAATCACCTACTGAT-
--ANCCACCTGTTGCNC
 A T C G A G T C C G T A C G T A C A G T A G T C G T C A A G T C A G T C C G A T C T G A A G T C C G A T A C T G C T G A A C G T A C G T
A C G T A C G T C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:SCAATCACCTACTGAT
----CCCCCTGCTGTG
 A T C G A G T C C G T A C G T A C A G T A G T C G T C A A G T C A G T C C G A T C T G A A G T C C G A T A C T G C T G A A C G T
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:SCAATCACCTACTGAT
-----CAGCAGCTGN-
 A T C G A G T C C G T A C G T A C A G T A G T C G T C A A G T C A G T C C G A T C T G A A G T C C G A T A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.58
Offset:7
Orientation:forward strand
Alignment:SCAATCACCTACTGAT-
-------CCTGCTGAGH
 A T C G A G T C C G T A C G T A C A G T A G T C G T C A A G T C A G T C C G A T C T G A A G T C C G A T A C T G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:SCAATCACCTACTGAT
------ANCAGCTG--
 A T C G A G T C C G T A C G T A C A G T A G T C G T C A A G T C A G T C C G A T C T G A A G T C C G A T A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:7
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:SCAATCACCTACTGAT-
-------HCAGCTGDTN
 A T C G A G T C C G T A C G T A C A G T A G T C G T C A A G T C A G T C C G A T C T G A A G T C C G A T A C T G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T

Ascl2/MA0816.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:SCAATCACCTACTGAT
---AGCAGCTGCT---
 A T C G A G T C C G T A C G T A C A G T A G T C G T C A A G T C A G T C C G A T C T G A A G T C C G A T A C T G C T G A A C G T
A C G T A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:SCAATCACCTACTGAT----
---CTCAGCAGCTGCTACTG
 A T C G A G T C C G T A C G T A C A G T A G T C G T C A A G T C A G T C C G A T C T G A A G T C C G A T A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:SCAATCACCTACTGAT---
----TCNCCTGCTGNGNNN
 A T C G A G T C C G T A C G T A C A G T A G T C G T C A A G T C A G T C C G A T C T G A A G T C C G A T A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G