Information for 10-GTTTGCAAACCAT (Motif 20)

A C T G C G A T A C G T A C G T A C T G A G T C C G T A C G T A C T G A A G T C G A T C C G T A A C G T
Reverse Opposite:
T G C A A C G T C A T G A C T G A G C T C G A T C G A T C T A G G T A C C G T A G T C A C G T A A G T C
p-value:1e-10
log p-value:-2.321e+01
Information Content per bp:1.797
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif9.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets70.3 +/- 17.0bp
Average Position of motif in Background51.9 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTTTGCAAACCAT--
ATTTGCATACAATGG
 A C T G C G A T A C G T A C G T A C T G A G T C C G T A C G T A C T G A A G T C G A T C C G T A A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0044.1_Mtf1_1/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GTTTGCAAACCAT
GGGCCGTGTGCAAAAA--
 A C G T A C G T A C G T A C G T A C G T A C T G C G A T A C G T A C G T A C T G A G T C C G T A C G T A C T G A A G T C G A T C C G T A A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GTTTGCAAACCAT
TNTAATTTGCATACNA-
 A C G T A C G T A C G T A C G T A C T G C G A T A C G T A C G T A C T G A G T C C G T A C G T A C T G A A G T C G A T C C G T A A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GTTTGCAAACCAT
TNTAATTTGCATACNA-
 A C G T A C G T A C G T A C G T A C T G C G A T A C G T A C G T A C T G A G T C C G T A C G T A C T G A A G T C G A T C C G T A A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTTTGCAAACCAT
-TTTGAAACCG--
 A C T G C G A T A C G T A C G T A C T G A G T C C G T A C G T A C T G A A G T C G A T C C G T A A C G T
A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GTTTGCAAACCAT
TNTAATTTGCATANNN-
 A C G T A C G T A C G T A C G T A C T G C G A T A C G T A C G T A C T G A G T C C G T A C G T A C T G A A G T C G A T C C G T A A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A A C G T

MTF1/MA0863.1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GTTTGCAAACCAT
GTGCCGTGTGCAAA----
 A C G T A C G T A C G T A C G T A C G T A C T G C G A T A C G T A C G T A C T G A G T C C G T A C G T A C T G A A G T C G A T C C G T A A C G T
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GTTTGCAAACCAT
TTCATTTGCATAT---
 A C G T A C G T A C G T A C T G C G A T A C G T A C G T A C T G A G T C C G T A C G T A C T G A A G T C G A T C C G T A A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTTTGCAAACCAT
ATTTGCATAA---
 A C T G C G A T A C G T A C G T A C T G A G T C C G T A C G T A C T G A A G T C G A T C C G T A A C G T
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTTTGCAAACCAT--
ATTTGCATAACAATG
 A C T G C G A T A C G T A C G T A C T G A G T C C G T A C G T A C T G A A G T C G A T C C G T A A C G T A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G