Information for 7-AGGTCAAAGTACA (Motif 3)

C T G A C T A G A T C G A C G T A G T C C G T A T C G A G C T A A T C G A G C T T G C A G T A C G T C A
Reverse Opposite:
A C G T A C T G A C G T T C G A T A G C C G A T A G C T G A C T T C A G T G C A T A G C G A T C G A C T
p-value:1e-21
log p-value:-4.856e+01
Information Content per bp:1.658
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif6.01%
Number of Background Sequences with motif425.2
Percentage of Background Sequences with motif0.93%
Average Position of motif in Targets46.7 +/- 29.4bp
Average Position of motif in Background49.6 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAAGTACA--
GGGGTCAAAGTCCAAT
 A C G T C T G A C T A G A T C G A C G T A G T C C G T A T C G A G C T A A T C G A G C T T G C A G T A C G T C A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---AGGTCAAAGTACA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T C T G A C T A G A T C G A C G T A G T C C G T A T C G A G C T A A T C G A G C T T G C A G T A C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAAAGTACA
AGAGTCCAAAGTCCA
 A C G T A C G T C T G A C T A G A T C G A C G T A G T C C G T A T C G A G C T A A T C G A G C T T G C A G T A C G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:4
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAAGTACA
GAGGTCAAAGGTCA
 A C G T C T G A C T A G A T C G A C G T A G T C C G T A T C G A G C T A A T C G A G C T T G C A G T A C G T C A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Nr2f6/MA0677.1/Jaspar

Match Rank:5
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAAGTACA
GAGGTCAAAGGTCA
 A C G T C T G A C T A G A T C G A C G T A G T C C G T A T C G A G C T A A T C G A G C T T G C A G T A C G T C A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

RXRG/MA0856.1/Jaspar

Match Rank:6
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAAGTACA
GGGGTCAAAGGTCA
 A C G T C T G A C T A G A T C G A C G T A G T C C G T A T C G A G C T A A T C G A G C T T G C A G T A C G T C A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

NR2C2/MA0504.1/Jaspar

Match Rank:7
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAAAGTACA
AGGGGTCAGAGGTCA
 A C G T A C G T C T G A C T A G A T C G A C G T A G T C C G T A T C G A G C T A A T C G A G C T T G C A G T A C G T C A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

Rxra/MA0512.2/Jaspar

Match Rank:8
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAAGTACA
GGGGTCAAAGGTCA
 A C G T C T G A C T A G A T C G A C G T A G T C C G T A T C G A G C T A A T C G A G C T T G C A G T A C G T C A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAAGTACA
TAGGGCAAAGGTCA
 A C G T C T G A C T A G A T C G A C G T A G T C C G T A T C G A G C T A A T C G A G C T T G C A G T A C G T C A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:10
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAAAGTACA
GGGGTCAAAGGTCA
 A C G T C T G A C T A G A T C G A C G T A G T C C G T A T C G A G C T A A T C G A G C T T G C A G T A C G T C A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A