Information for 25-GCACAKRGACTTG (Motif 25)

A T C G A G T C C G T A T G A C C G T A A C T G C T G A T A C G T G C A G T A C A G C T C A G T C T A G
Reverse Opposite:
A G T C G T C A C T G A A C T G A C G T A T G C G A C T T G A C A C G T A C T G C G A T A C T G A T G C
p-value:1e-7
log p-value:-1.773e+01
Information Content per bp:1.718
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif10.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.2 +/- 20.9bp
Average Position of motif in Background49.1 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCACAKRGACTTG
CGAAGCACACAAAATA-
 A C G T A C G T A C G T A C G T A T C G A G T C C G T A T G A C C G T A A C T G C T G A T A C G T G C A G T A C A G C T C A G T C T A G
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T

Myc/MA0147.2/Jaspar

Match Rank:2
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCACAKRGACTTG
AAGCACATGG-----
 A C G T A C G T A T C G A G T C C G T A T G A C C G T A A C T G C T G A T A C G T G C A G T A C A G C T C A G T C T A G
T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:3
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GCACAKRGACTTG
NNTTTGCACACGGCCC--
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A T G A C C G T A A C T G C T G A T A C G T G C A G T A C A G C T C A G T C T A G
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCACAKRGACTTG
CCAGGAACAG-------
 A C G T A C G T A C G T A C G T A T C G A G T C C G T A T G A C C G T A A C T G C T G A T A C G T G C A G T A C A G C T C A G T C T A G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCACAKRGACTTG
AGCGGCACACACGCAA-
 A C G T A C G T A C G T A C G T A T C G A G T C C G T A T G A C C G T A A C T G C T G A T A C G T G C A G T A C A G C T C A G T C T A G
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.52
Offset:-7
Orientation:forward strand
Alignment:-------GCACAKRGACTTG
TACATGTGCACATAAAA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A T G A C C G T A A C T G C T G A T A C G T G C A G T A C A G C T C A G T C T A G
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GCACAKRGACTTG
---BNTGDCCTTG
 A T C G A G T C C G T A T G A C C G T A A C T G C T G A T A C G T G C A G T A C A G C T C A G T C T A G
A C G T A C G T A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GCACAKRGACTTG
TTGGCANNNTGCCAAG
 A C G T A C G T A C G T A T C G A G T C C G T A T G A C C G T A A C T G C T G A T A C G T G C A G T A C A G C T C A G T C T A G
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

MTF1/MA0863.1/Jaspar

Match Rank:9
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---GCACAKRGACTTG
TTTGCACACGGCAC--
 A C G T A C G T A C G T A T C G A G T C C G T A T G A C C G T A A C T G C T G A T A C G T G C A G T A C A G C T C A G T C T A G
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.49
Offset:-7
Orientation:forward strand
Alignment:-------GCACAKRGACTTG
CAGATGTGCACATACGT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A T G A C C G T A A C T G C T G A T A C G T G C A G T A C A G C T C A G T C T A G
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T A C G T A C G T