Information for 7-GCHGTTTGBCAAGCTC (Motif 14)

A C T G T G A C G C T A A C T G G C A T A G C T A C G T A T C G A G T C A G T C C T G A C G T A A T C G A G T C C G A T A G T C
Reverse Opposite:
A C T G C G T A A C T G A T G C A C G T A G C T C T A G T A C G A T G C C G T A C T G A C G T A A G T C C A G T A C T G G T A C
p-value:1e-11
log p-value:-2.549e+01
Information Content per bp:1.787
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.6 +/- 22.9bp
Average Position of motif in Background29.1 +/- 10.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GCHGTTTGBCAAGCTC
-----TTGCCAAG---
 A C T G T G A C G C T A A C T G G C A T A G C T A C G T A T C G A G T C A G T C C T G A C G T A A T C G A G T C C G A T A G T C
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:2
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCHGTTTGBCAAGCTC
---NTTTTACGAGN--
 A C T G T G A C G C T A A C T G G C A T A G C T A C G T A T C G A G T C A G T C C T G A C G T A A T C G A G T C C G A T A G T C
A C G T A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GCHGTTTGBCAAGCTC-
-------NTCAAGGTCA
 A C T G T G A C G C T A A C T G G C A T A G C T A C G T A T C G A G T C A G T C C T G A C G T A A T C G A G T C C G A T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.51
Offset:10
Orientation:forward strand
Alignment:GCHGTTTGBCAAGCTC
----------CAGCC-
 A C T G T G A C G C T A A C T G G C A T A G C T A C G T A T C G A G T C A G T C C T G A C G T A A T C G A G T C C G A T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GCHGTTTGBCAAGCTC-
-------BTCAAGGTCA
 A C T G T G A C G C T A A C T G G C A T A G C T A C G T A T C G A G T C A G T C C T G A C G T A A T C G A G T C C G A T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A

Nr2e3/MA0164.1/Jaspar

Match Rank:6
Score:0.51
Offset:9
Orientation:forward strand
Alignment:GCHGTTTGBCAAGCTC
---------CAAGCTT
 A C T G T G A C G C T A A C T G G C A T A G C T A C G T A T C G A G T C A G T C C T G A C G T A A T C G A G T C C G A T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GCHGTTTGBCAAGCTC
----GGTGCCAAGT--
 A C T G T G A C G C T A A C T G G C A T A G C T A C G T A T C G A G T C A G T C C T G A C G T A A T C G A G T C C G A T A G T C
A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.50
Offset:3
Orientation:forward strand
Alignment:GCHGTTTGBCAAGCTC
---HTTTCCCASG---
 A C T G T G A C G C T A A C T G G C A T A G C T A C G T A T C G A G T C A G T C C T G A C G T A A T C G A G T C C G A T A G T C
A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GCHGTTTGBCAAGCTC-
-ANATTTTACGAGNNNN
 A C T G T G A C G C T A A C T G G C A T A G C T A C G T A T C G A G T C A G T C C T G A C G T A A T C G A G T C C G A T A G T C A C G T
A C G T G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.49
Offset:8
Orientation:forward strand
Alignment:GCHGTTTGBCAAGCTC---
--------TCAAGGTCATA
 A C T G T G A C G C T A A C T G G C A T A G C T A C G T A T C G A G T C A G T C C T G A C G T A A T C G A G T C C G A T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A