Information for 17-AGRARATWCYYYGMCT (Motif 30)

C G T A A C T G C T G A C G T A C T G A C G T A A C G T C G T A G T A C G A T C A G C T A G C T A C T G G T C A A T G C A C G T
Reverse Opposite:
C G T A A T C G A C G T A G T C C T G A C T G A C T A G A C T G C G A T C G T A A C G T A G C T A C G T A G C T A G T C A C G T
p-value:1e-8
log p-value:-1.977e+01
Information Content per bp:1.824
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets28.2 +/- 18.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGRARATWCYYYGMCT
-GGAAATTCCC-----
 C G T A A C T G C T G A C G T A C T G A C G T A A C G T C G T A G T A C G A T C A G C T A G C T A C T G G T C A A T G C A C G T
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGRARATWCYYYGMCT
NACAGGAAAT---------
 A C G T A C G T A C G T C G T A A C T G C T G A C G T A C T G A C G T A A C G T C G T A G T A C G A T C A G C T A G C T A C T G G T C A A T G C A C G T
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGRARATWCYYYGMCT
-GGAAATTCCC-----
 C G T A A C T G C T G A C G T A C T G A C G T A A C G T C G T A G T A C G A T C A G C T A G C T A C T G G T C A A T G C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGRARATWCYYYGMCT
-GGAAATCCCC-----
 C G T A A C T G C T G A C G T A C T G A C G T A A C G T C G T A G T A C G A T C A G C T A G C T A C T G G T C A A T G C A C G T
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGRARATWCYYYGMCT
GGGAAATCCCCN----
 C G T A A C T G C T G A C G T A C T G A C G T A A C G T C G T A G T A C G A T C A G C T A G C T A C T G G T C A A T G C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T A C G T A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AGRARATWCYYYGMCT
NACAGGAAAT---------
 A C G T A C G T A C G T C G T A A C T G C T G A C G T A C T G A C G T A A C G T C G T A G T A C G A T C A G C T A G C T A C T G G T C A A T G C A C G T
T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AGRARATWCYYYGMCT
-GGAAANCCCC-----
 C G T A A C T G C T G A C G T A C T G A C G T A A C G T C G T A G T A C G A T C A G C T A G C T A C T G G T C A A T G C A C G T
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T A C G T A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGRARATWCYYYGMCT
--CACATTCCAT----
 C G T A A C T G C T G A C G T A C T G A C G T A A C G T C G T A G T A C G A T C A G C T A G C T A C T G G T C A A T G C A C G T
A C G T A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T A C G T A C G T A C G T A C G T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:AGRARATWCYYYGMCT
---RCATTCCWGG---
 C G T A A C T G C T G A C G T A C T G A C G T A A C G T C G T A G T A C G A T C A G C T A G C T A C T G G T C A A T G C A C G T
A C G T A C G T A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G A C G T A C G T A C G T

HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer

Match Rank:10
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----AGRARATWCYYYGMCT
TTCTAGAABNTTCTA-----
 A C G T A C G T A C G T A C G T C G T A A C T G C T G A C G T A C T G A C G T A A C G T C G T A G T A C G A T C A G C T A G C T A C T G G T C A A T G C A C G T
G A C T A G C T G T A C G A C T C T G A A C T G G T C A C T G A A T G C T A C G G A C T A C G T A G T C G A C T C T G A A C G T A C G T A C G T A C G T A C G T