Information for 2-GTTTCTAGTTGCCAGA (Motif 3)

A C T G A C G T A C G T C G A T A T G C C G A T C T G A A C T G C A G T C G A T A C T G A G T C A G T C C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G C T A G A G T C C G T A G T C A A G T C A G C T C G T A A T C G C G T A G T C A C G T A A G T C
p-value:1e-12
log p-value:-2.953e+01
Information Content per bp:1.891
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.4 +/- 15.6bp
Average Position of motif in Background27.5 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.62
Offset:8
Orientation:reverse strand
Alignment:GTTTCTAGTTGCCAGA--
--------ATGCCAGACN
 A C T G A C G T A C G T C G A T A T G C C G A T C T G A A C T G C A G T C G A T A C T G A G T C A G T C C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:6
Orientation:forward strand
Alignment:GTTTCTAGTTGCCAGA--
------AGGTGHCAGACA
 A C T G A C G T A C G T C G A T A T G C C G A T C T G A A C T G C A G T C G A T A C T G A G T C A G T C C G T A A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:GTTTCTAGTTGCCAGA---
------AGGTGNCAGACAG
 A C T G A C G T A C G T C G A T A T G C C G A T C T G A A C T G C A G T C G A T A C T G A G T C A G T C C G T A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.56
Offset:8
Orientation:forward strand
Alignment:GTTTCTAGTTGCCAGA
--------TTGCCAAG
 A C T G A C G T A C G T C G A T A T G C C G A T C T G A A C T G C A G T C G A T A C T G A G T C A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.54
Offset:7
Orientation:forward strand
Alignment:GTTTCTAGTTGCCAGA
-------CGTGCCAAG
 A C T G A C G T A C G T C G A T A T G C C G A T C T G A A C T G C A G T C G A T A C T G A G T C A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GTTTCTAGTTGCCAGA-
-----CTGTTGCTAGGS
 A C T G A C G T A C G T C G A T A T G C C G A T C T G A A C T G C A G T C G A T A C T G A G T C A G T C C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:GTTTCTAGTTGCCAGA
---------TGCCAA-
 A C T G A C G T A C G T C G A T A T G C C G A T C T G A A C T G C A G T C G A T A C T G A G T C A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GTTTCTAGTTGCCAGA
------ARNTGACA--
 A C T G A C G T A C G T C G A T A T G C C G A T C T G A A C T G C A G T C G A T A C T G A G T C A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:GTTTCTAGTTGCCAGA-
-------VBTGWCAGCB
 A C T G A C G T A C G T C G A T A T G C C G A T C T G A A C T G C A G T C G A T A C T G A G T C A G T C C G T A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GTTTCTAGTTGCCAGA
-TGGCAGNCTGCCAG-
 A C T G A C G T A C G T C G A T A T G C C G A T C T G A A C T G C A G T C G A T A C T G A G T C A G T C C G T A A C T G C G T A
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T