Information for 2-CAGGAYTAGA (Motif 2)

G T A C C G T A C T A G A C T G C T G A A G T C A C G T C G T A A C T G C T G A
Reverse Opposite:
A G C T A G T C C G A T C G T A C T A G A G C T A G T C G A T C C G A T A C T G
p-value:1e-13
log p-value:-3.063e+01
Information Content per bp:1.802
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.21%
Number of Background Sequences with motif90.2
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets54.3 +/- 25.7bp
Average Position of motif in Background45.8 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CAGGAYTAGA
TTGCCCGGATTAGG
 A C G T A C G T A C G T A C G T G T A C C G T A C T A G A C T G C T G A A G T C A C G T C G T A A C T G C T G A
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CAGGAYTAGA
--GGATTAGC
 G T A C C G T A C T A G A C T G C T G A A G T C A C G T C G T A A C T G C T G A
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAGGAYTAGA
-RGGATTAR-
 G T A C C G T A C T A G A C T G C T G A A G T C A C G T C G T A A C T G C T G A
A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CAGGAYTAGA
VRGGATTARN
 G T A C C G T A C T A G A C T G C T G A A G T C A C G T C G T A A C T G C T G A
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CAGGAYTAGA
-NGGATTAA-
 G T A C C G T A C T A G A C T G C T G A A G T C A C G T C G T A A C T G C T G A
A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAGGAYTAGA
AAGAGGATTAG-
 A C G T A C G T G T A C C G T A C T A G A C T G C T G A A G T C A C G T C G T A A C T G C T G A
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAGGAYTAGA
-GGGATTAA-
 G T A C C G T A C T A G A C T G C T G A A G T C A C G T C G T A A C T G C T G A
A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAGGAYTAGA
-CGGATTAN-
 G T A C C G T A C T A G A C T G C T G A A G T C A C G T C G T A A C T G C T G A
A C G T T A G C T A C G A T C G G T C A A C G T G C A T C G T A C T G A A C G T

PITX3/MA0714.1/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CAGGAYTAGA
-GGGATTANN
 G T A C C G T A C T A G A C T G C T G A A G T C A C G T C G T A A C T G C T G A
A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

SMAD3/MA0795.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CAGGAYTAGA--
--TGTCTAGACG
 G T A C C G T A C T A G A C T G C T G A A G T C A C G T C G T A A C T G C T G A A C G T A C G T
A C G T A C G T C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G