Information for 1-GCAKKTKATGAKA (Motif 4)

A C T G A G T C C G T A C A T G A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G C T G A
Reverse Opposite:
A G C T G T A C A C G T A G T C C G T A A C G T G T C A C G T A G T C A G T A C A C G T A C T G A G T C
p-value:1e-11
log p-value:-2.728e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.4 +/- 25.5bp
Average Position of motif in Background47.0 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC10/MA0905.1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCAKKTKATGAKA
--NTTTTACGAC-
 A C T G A G T C C G T A C A T G A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G C T G A
A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCAKKTKATGAKA---
NAATTTTACGAGNTNN
 A C T G A G T C C G T A C A T G A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G C T G A A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCAKKTKATGAKA---
ANATTTTACGAGNNNN
 A C T G A G T C C G T A C A T G A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G C T G A A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCAKKTKATGAKA
--NTTTTACGAGN
 A C T G A G T C C G T A C A T G A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G C T G A
A C G T A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCAKKTKATGAKA
---TTTTATTRGN
 A C T G A G T C C G T A C A T G A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G C T G A
A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

PB0003.1_Ascl2_1/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GCAKKTKATGAKA
NNNNAGCAGCTGCTGAN-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A C A T G A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G C T G A
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCAKKTKATGAKA
--NTTTTATGAC-
 A C T G A G T C C G T A C A T G A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G C T G A
A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCAKKTKATGAKA
--NTTTTACGAC-
 A C T G A G T C C G T A C A T G A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G C T G A
A C G T A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCAKKTKATGAKA
---TTTTATTGC-
 A C T G A G T C C G T A C A T G A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G C T G A
A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCAKKTKATGAKA--
TNAATTTTATTACCTN
 A C G T A C T G A G T C C G T A C A T G A C G T A C G T A C G T C G T A A C G T A C T G C G T A A C T G C T G A A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A