Information for 5-AGCAAAATTTTTC (Motif 11)

C G T A A C T G G A T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A G T C
Reverse Opposite:
C T A G G T C A C G T A C G T A G T C A C G T A A C G T A C G T A C G T A C G T C A T G A G T C A C G T
p-value:1e-7
log p-value:-1.700e+01
Information Content per bp:1.885
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.2 +/- 34.5bp
Average Position of motif in Background35.1 +/- 10.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0165.1_Sox11_2/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AGCAAAATTTTTC----
---AAAATTGTTATGAA
 C G T A A C T G G A T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PB0063.1_Sox13_1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGCAAAATTTTTC
TTAAGAACAATAAATT
 A C G T A C G T A C G T C G T A A C T G G A T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A G T C
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0175.1_Sox4_2/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCAAAATTTTTC----
GGAAAAATTGTTAGGAA
 C G T A A C T G G A T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

PB0145.1_Mafb_2/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AGCAAAATTTTTC
CAATTGCAAAAATAT--
 A C G T A C G T A C G T A C G T C G T A A C T G G A T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A G T C
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AGCAAAATTTTTC
AATGCAATAAAATTTAT-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G G A T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A G T C
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---AGCAAAATTTTTC
NNTNNCAATATTAG--
 A C G T A C G T A C G T C G T A A C T G G A T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A G T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---AGCAAAATTTTTC
NNTNNCAATATTAG--
 A C G T A C G T A C G T C G T A A C T G G A T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A G T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AGCAAAATTTTTC
-----AATTATT-
 C G T A A C T G G A T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A G T C
A C G T A C G T A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----AGCAAAATTTTTC
NNTNANAACAATTNNA-
 A C G T A C G T A C G T A C G T C G T A A C T G G A T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A G T C
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:AGCAAAATTTTTC
TGGAAAA------
 C G T A A C T G G A T C C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A G T C
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T A C G T