Information for 13-AGCCTVGAAAGAGAGA (Motif 21)

C G T A A C T G A G T C A G T C A C G T T A C G C T A G T G C A T C G A C G T A C T A G C T G A T C A G C G T A A C T G C G T A
Reverse Opposite:
C G A T A G T C G C A T A G T C A G C T A G T C G C A T A G C T A C G T A G T C A G T C G T C A A C T G A C T G A G T C C G A T
p-value:1e-8
log p-value:-1.997e+01
Information Content per bp:1.775
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.0 +/- 26.1bp
Average Position of motif in Background50.2 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGCCTVGAAAGAGAGA
CAGCC------------
 A C G T C G T A A C T G A G T C A G T C A C G T T A C G C T A G T G C A T C G A C G T A C T A G C T G A T C A G C G T A A C T G C G T A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AGCCTVGAAAGAGAGA----
NNCCTGNAAAAAAAAAAAAA
 C G T A A C T G A G T C A G T C A C G T T A C G C T A G T G C A T C G A C G T A C T A G C T G A T C A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGCCTVGAAAGAGAGA----
NNCCTGNAAAAAAAAAAAAA
 C G T A A C T G A G T C A G T C A C G T T A C G C T A G T G C A T C G A C G T A C T A G C T G A T C A G C G T A A C T G C G T A A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--AGCCTVGAAAGAGAGA
BCAGACWA----------
 A C G T A C G T C G T A A C T G A G T C A G T C A C G T T A C G C T A G T G C A T C G A C G T A C T A G C T G A T C A G C G T A A C T G C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-AGCCTVGAAAGAGAGA
AGGCCTAG---------
 A C G T C G T A A C T G A G T C A G T C A C G T T A C G C T A G T G C A T C G A C G T A C T A G C T G A T C A G C G T A A C T G C G T A
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:6
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-AGCCTVGAAAGAGAGA
TTTCCTAGAAAGCA---
 A C G T C G T A A C T G A G T C A G T C A C G T T A C G C T A G T G C A T C G A C G T A C T A G C T G A T C A G C G T A A C T G C G T A
C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.46
Offset:-2
Orientation:reverse strand
Alignment:--AGCCTVGAAAGAGAGA
SCAGYCADGCATGAC---
 A C G T A C G T C G T A A C T G A G T C A G T C A C G T T A C G C T A G T G C A T C G A C G T A C T A G C T G A T C A G C G T A A C T G C G T A
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.45
Offset:-1
Orientation:forward strand
Alignment:-AGCCTVGAAAGAGAGA
AGGCCTNG---------
 A C G T C G T A A C T G A G T C A G T C A C G T T A C G C T A G T G C A T C G A C G T A C T A G C T G A T C A G C G T A A C T G C G T A
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZBTB33/MA0527.1/Jaspar

Match Rank:9
Score:0.45
Offset:-2
Orientation:reverse strand
Alignment:--AGCCTVGAAAGAGAGA
NAGNTCTCGCGAGAN---
 A C G T A C G T C G T A A C T G A G T C A G T C A C G T T A C G C T A G T G C A T C G A C G T A C T A G C T G A T C A G C G T A A C T G C G T A
T A G C T C G A T C A G T C G A A G C T T G A C A G C T A G T C C T A G G A T C A C T G C T G A A C T G T C G A T C A G A C G T A C G T A C G T

PB0006.1_Bcl6b_1/Jaspar

Match Rank:10
Score:0.45
Offset:-4
Orientation:reverse strand
Alignment:----AGCCTVGAAAGAGAGA
NNNATTCCTCGAAAGN----
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A G T C A C G T T A C G C T A G T G C A T C G A C G T A C T A G C T G A T C A G C G T A A C T G C G T A
A T G C C T G A C G T A C G T A C G A T G C A T G T A C A G T C G C A T T G A C C T A G G C T A C G T A C T G A C T A G G C T A A C G T A C G T A C G T A C G T