Information for 3-AAGGTGCTTTCCC (Motif 2)

G C T A C G T A T A C G A T C G A C G T A C T G G T A C A G C T A C G T A C G T A G T C G T A C G A T C
Reverse Opposite:
C T A G A C T G C T A G C G T A G T C A C T G A C A T G G T A C T C G A A T G C A G T C G A C T C A G T
p-value:1e-37
log p-value:-8.576e+01
Information Content per bp:1.764
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.69%
Number of Background Sequences with motif47.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets49.2 +/- 24.1bp
Average Position of motif in Background49.4 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AAGGTGCTTTCCC
-NGGGGATTTCCC
 G C T A C G T A T A C G A T C G A C G T A C T G G T A C A G C T A C G T A C G T A G T C G T A C G A T C
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.73
Offset:2
Orientation:forward strand
Alignment:AAGGTGCTTTCCC
--GGGGATTTCC-
 G C T A C G T A T A C G A T C G A C G T A C T G G T A C A G C T A C G T A C G T A G T C G T A C G A T C
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.73
Offset:2
Orientation:forward strand
Alignment:AAGGTGCTTTCCC
--GGGGATTTCC-
 G C T A C G T A T A C G A T C G A C G T A C T G G T A C A G C T A C G T A C G T A G T C G T A C G A T C
A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.70
Offset:2
Orientation:forward strand
Alignment:AAGGTGCTTTCCC
--GGGAATTTCC-
 G C T A C G T A T A C G A T C G A C G T A C T G G T A C A G C T A C G T A C G T A G T C G T A C G A T C
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AAGGTGCTTTCCC
--GGGAATTTCC-
 G C T A C G T A T A C G A T C G A C G T A C T G G T A C A G C T A C G T A C G T A G T C G T A C G A T C
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AAGGTGCTTTCCC-
-AGGGGATTCCCCT
 G C T A C G T A T A C G A T C G A C G T A C T G G T A C A G C T A C G T A C G T A G T C G T A C G A T C A C G T
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFATC1/MA0624.1/Jaspar

Match Rank:7
Score:0.62
Offset:5
Orientation:forward strand
Alignment:AAGGTGCTTTCCC--
-----ATTTTCCATT
 G C T A C G T A T A C G A T C G A C G T A C T G G T A C A G C T A C G T A C G T A G T C G T A C G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T

PH0037.1_Hdx/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAGGTGCTTTCCC---
TNNNATGATTTCNNCNN
 A C G T G C T A C G T A T A C G A T C G A C G T A C T G G T A C A G C T A C G T A C G T A G T C G T A C G A T C A C G T A C G T A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

NFATC2/MA0152.1/Jaspar

Match Rank:9
Score:0.62
Offset:6
Orientation:forward strand
Alignment:AAGGTGCTTTCCC
------TTTTCCA
 G C T A C G T A T A C G A T C G A C G T A C T G G T A C A G C T A C G T A C G T A G T C G T A C G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AAGGTGCTTTCCC-
--GGGGATTCCCCC
 G C T A C G T A T A C G A T C G A C G T A C T G G T A C A G C T A C G T A C G T A G T C G T A C G A T C A C G T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C