Information for 1-GGGRAATTCC (Motif 1)

C A T G A C T G C A T G T C A G T C G A G C T A C G A T A G C T A G T C A G T C
Reverse Opposite:
T C A G T C A G T C G A G C T A C G A T A G C T A G T C G T A C T G A C G T A C
p-value:1e-270
log p-value:-6.228e+02
Information Content per bp:1.615
Number of Target Sequences with motif362.0
Percentage of Target Sequences with motif43.15%
Number of Background Sequences with motif1890.4
Percentage of Background Sequences with motif3.91%
Average Position of motif in Targets55.3 +/- 21.3bp
Average Position of motif in Background50.4 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-GGGRAATTCC-
NGGGGATTTCCC
 A C G T C A T G A C T G C A T G T C A G T C G A G C T A C G A T A G C T A G T C A G T C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GGGRAATTCC
GGGGATTTCC
 C A T G A C T G C A T G T C A G T C G A G C T A C G A T A G C T A G T C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GGGRAATTCC
GGGGATTTCC
 C A T G A C T G C A T G T C A G T C G A G C T A C G A T A G C T A G T C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GGGRAATTCC
GGGAATTTCC
 C A T G A C T G C A T G T C A G T C G A G C T A C G A T A G C T A G T C A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GGGRAATTCC
GGGAATTTCC
 C A T G A C T G C A T G T C A G T C G A G C T A C G A T A G C T A G T C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GGGRAATTCC--
AGGGGAATCCCCT
 A C G T C A T G A C T G C A T G T C A G T C G A G C T A C G A T A G C T A G T C A G T C A C G T A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GGGRAATTCC-
GGGGGAATCCCC
 A C G T C A T G A C T G C A T G T C A G T C G A G C T A C G A T A G C T A G T C A G T C A C G T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GGGRAATTCC--
AGGGGAATCCCCT
 A C G T C A T G A C T G C A T G T C A G T C G A G C T A C G A T A G C T A G T C A G T C A C G T A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GGGRAATTCC---
---GCATTCCAGN
 C A T G A C T G C A T G T C A G T C G A G C T A C G A T A G C T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:10
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GGGRAATTCC---
---RCATTCCWGG
 C A T G A C T G C A T G T C A G T C G A G C T A C G A T A G C T A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G