Information for 7-AGAGGTCACCTCA (Motif 6)

C G T A A C T G C G T A C T A G A C T G A G C T G T A C C G T A A G T C T G A C A G C T A T G C G C T A
Reverse Opposite:
C A G T A T C G C T G A A C T G A C T G A C G T A C T G C T G A A G T C A G T C C G A T A G T C C G A T
p-value:1e-14
log p-value:-3.363e+01
Information Content per bp:1.811
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif6.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.1 +/- 18.9bp
Average Position of motif in Background64.7 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:AGAGGTCACCTCA
AGRGGTCA-----
 C G T A A C T G C G T A C T A G A C T G A G C T G T A C C G T A A G T C T G A C A G C T A T G C G C T A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AGAGGTCACCTCA
TRAGGTCA-----
 C G T A A C T G C G T A C T A G A C T G A G C T G T A C C G T A A G T C T G A C A G C T A T G C G C T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGAGGTCACCTCA
-AAGGTCAC----
 C G T A A C T G C G T A C T A G A C T G A G C T G T A C C G T A A G T C T G A C A G C T A T G C G C T A
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:4
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----AGAGGTCACCTCA
TCTCAAAGGTCACCTG-
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A C T A G A C T G A G C T G T A C C G T A A G T C T G A C A G C T A T G C G C T A
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGTCACCTCA
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A C T A G A C T G A G C T G T A C C G T A A G T C T G A C A G C T A T G C G C T A
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

SREBF1/MA0595.1/Jaspar

Match Rank:6
Score:0.69
Offset:4
Orientation:forward strand
Alignment:AGAGGTCACCTCA-
----ATCACCCCAC
 C G T A A C T G C G T A C T A G A C T G A G C T G T A C C G T A A G T C T G A C A G C T A T G C G C T A A C G T
A C G T A C G T A C G T A C G T T C G A A C G T A G T C C G T A A T G C T A G C A G T C T A G C C G T A A G T C

SREBF2/MA0596.1/Jaspar

Match Rank:7
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:AGAGGTCACCTCA-
----ATCACCCCAT
 C G T A A C T G C G T A C T A G A C T G A G C T G T A C C G T A A G T C T G A C A G C T A T G C G C T A A C G T
A C G T A C G T A C G T A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AGAGGTCACCTCA
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A C T A G A C T G A G C T G T A C C G T A A G T C T G A C A G C T A T G C G C T A
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AGAGGTCACCTCA-
--CNGTCACGCCAC
 C G T A A C T G C G T A C T A G A C T G A G C T G T A C C G T A A G T C T G A C A G C T A T G C G C T A A C G T
A C G T A C G T G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGAGGTCACCTCA
TCTCAAAGGTCACGAG-
 A C G T A C G T A C G T A C G T C G T A A C T G C G T A C T A G A C T G A G C T G T A C C G T A A G T C T G A C A G C T A T G C G C T A
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T