Information for 4-AAAAAACCCC (Motif 3)

C G T A C T G A T C G A C G T A G C T A T C G A A G T C G T A C G A T C G A T C
Reverse Opposite:
C T A G C T A G C A T G T C A G A G C T C G A T G C A T A G C T A G C T G C A T
p-value:1e-17
log p-value:-4.104e+01
Information Content per bp:1.684
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif8.21%
Number of Background Sequences with motif1067.5
Percentage of Background Sequences with motif2.25%
Average Position of motif in Targets51.9 +/- 24.5bp
Average Position of motif in Background48.5 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AAAAAACCCC
GGAAATCCCC
 C G T A C T G A T C G A C G T A G C T A T C G A A G T C G T A C G A T C G A T C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AAAAAACCCC--
GTTAAAAAAAAAAATTA
 A C G T A C G T A C G T A C G T A C G T C G T A C T G A T C G A C G T A G C T A T C G A A G T C G T A C G A T C G A T C A C G T A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AAAAAACCCC
TACTGGAAAAAAAA--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A T C G A C G T A G C T A T C G A A G T C G T A C G A T C G A T C
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AAAAAACCCC-
GGGAAATCCCCN
 A C G T C G T A C T G A T C G A C G T A G C T A T C G A A G T C G T A C G A T C G A T C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

PB0116.1_Elf3_2/Jaspar

Match Rank:5
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------AAAAAACCCC
GTTCAAAAAAAAAATTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T G A T C G A C G T A G C T A T C G A A G T C G T A C G A T C G A T C
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAAAAACCCC
GGAAANCCCC
 C G T A C T G A T C G A C G T A G C T A T C G A A G T C G T A C G A T C G A T C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AAAAAACCCC
--TAATCCCN
 C G T A C T G A T C G A C G T A G C T A T C G A A G T C G T A C G A T C G A T C
A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AAAAAACCCC---
---AAACCACANN
 C G T A C T G A T C G A C G T A G C T A T C G A A G T C G T A C G A T C G A T C A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

POL007.1_BREd/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AAAAAACCCC
NANANAC---
 C G T A C T G A T C G A C G T A G C T A T C G A A G T C G T A C G A T C G A T C
T G C A T G C A T G A C T G C A G T C A T C G A G A T C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AAAAAACCCC
GGAAATTCCC
 C G T A C T G A T C G A C G T A G C T A T C G A A G T C G T A C G A T C G A T C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C