Information for 5-AAAATTCCCC (Motif 4)

C G T A C G T A C G T A C T G A G C A T G A C T A G T C A G T C A G T C G T A C
Reverse Opposite:
C A T G A C T G A C T G C T A G C T G A C G T A G A C T A C G T A C G T C G A T
p-value:1e-22
log p-value:-5.151e+01
Information Content per bp:1.855
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif335.0
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets52.5 +/- 24.7bp
Average Position of motif in Background49.8 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AAAATTCCCC
GGAAATTCCC-
 A C G T C G T A C G T A C G T A C T G A G C A T G A C T A G T C A G T C A G T C G T A C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T

MZF1/MA0056.1/Jaspar

Match Rank:2
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:AAAATTCCCC-
-----TCCCCA
 C G T A C G T A C G T A C T G A G C A T G A C T A G T C A G T C A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AAAATTCCCC
GGAAATTCCC-
 A C G T C G T A C G T A C G T A C T G A G C A T G A C T A G T C A G T C A G T C G T A C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-AAAATTCCCC
GGAAATCCCC-
 A C G T C G T A C G T A C G T A C T G A G C A T G A C T A G T C A G T C A G T C G T A C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AAAATTCCCC-
GGGAAATCCCCN
 A C G T C G T A C G T A C G T A C T G A G C A T G A C T A G T C A G T C A G T C G T A C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

PB0204.1_Zfp740_2/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AAAATTCCCC--------
-AAATTCCCCCCGGAAGT
 C G T A C G T A C G T A C T G A G C A T G A C T A G T C A G T C A G T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C T G A C T G A C A G T G C A T G A T C G A T C A G T C A G T C A T G C A T G C T A C G A T C G C T G A C T G A T C A G A G C T

GFY(?)/Promoter/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AAAATTCCCC
ACTACAATTCCC-
 A C G T A C G T A C G T C G T A C G T A C G T A C T G A G C A T G A C T A G T C A G T C A G T C G T A C
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAAATTCCCC--
GAAAAAATTGCAAGG
 A C G T A C G T A C G T C G T A C G T A C G T A C T G A G C A T G A C T A G T C A G T C A G T C G T A C A C G T A C G T
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

REL/MA0101.1/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAAATTCCCC
GGAAANCCCC-
 A C G T C G T A C G T A C G T A C T G A G C A T G A C T A G T C A G T C A G T C G T A C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T

PH0122.1_Obox2/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AAAATTCCCC---
ATAGTTAATCCCCCTCA
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A C T G A G C A T G A C T A G T C A G T C A G T C G T A C A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A