Information for 6-GAGACCAGAWCWA (Motif 9)

A C T G C G T A A C T G C G T A A G T C A G T C C G T A A C T G C G T A C G A T A T G C C G T A C G T A
Reverse Opposite:
C G A T C G A T A T C G C G T A A C G T A G T C A C G T C T A G A C T G A C G T A G T C A C G T A G T C
p-value:1e-11
log p-value:-2.594e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.6 +/- 14.1bp
Average Position of motif in Background47.8 +/- 2.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGACCAGAWCWA
-ATGCCAGACN--
 A C T G C G T A A C T G C G T A A G T C A G T C C G T A A C T G C G T A C G A T A T G C C G T A C G T A
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

Mecom/MA0029.1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGACCAGAWCWA-
AAGATAAGATAACA
 A C T G C G T A A C T G C G T A A G T C A G T C C G T A A C T G C G T A C G A T A T G C C G T A C G T A A C G T
C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

PB0121.1_Foxj3_2/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGACCAGAWCWA----
AACACCAAAACAAAGGA
 A C T G C G T A A C T G C G T A A G T C A G T C C G T A A C T G C G T A C G A T A T G C C G T A C G T A A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGACCAGAWCWA
NAAACCACAG---
 A C T G C G T A A C T G C G T A A G T C A G T C C G T A A C T G C G T A C G A T A T G C C G T A C G T A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GAGACCAGAWCWA
ACTGAAACCA------
 A C G T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A G T C C G T A A C T G C G T A C G A T A T G C C G T A C G T A
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GAGACCAGAWCWA
-AAACCACAGC--
 A C T G C G T A A C T G C G T A A G T C A G T C C G T A A C T G C G T A C G A T A T G C C G T A C G T A
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGACCAGAWCWA
NWAACCACADNN-
 A C T G C G T A A C T G C G T A A G T C A G T C C G T A A C T G C G T A C G A T A T G C C G T A C G T A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:8
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GAGACCAGAWCWA--
NNNNNBAGATAWYATCTVHN
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A G T C C G T A A C T G C G T A C G A T A T G C C G T A C G T A A C G T A C G T
C T G A C T G A C T A G T C G A C G T A A T G C C G T A A C T G C G T A A C G T C T G A C G A T A G C T C G T A A C G T A G T C C G A T T A C G G T C A G C A T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGACCAGAWCWA
-AAACCACANN--
 A C T G C G T A A C T G C G T A A G T C A G T C C G T A A C T G C G T A C G A T A T G C C G T A C G T A
A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T

PB0036.1_Irf6_1/Jaspar

Match Rank:10
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------GAGACCAGAWCWA
CTGATCGAAACCAAAGT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A G T C A G T C C G T A A C T G C G T A C G A T A T G C C G T A C G T A
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T A C G T A C G T