Information for 3-GTSCKSCAGGRTSSCT (Motif 4)

A C T G A C G T A T C G A G T C C A G T A T C G A G T C C G T A A C T G A C T G C T A G A C G T A T C G A T G C A G T C A C G T
Reverse Opposite:
C G T A A C T G A T C G A T G C C G T A G A T C G T A C A G T C A C G T A C T G A T G C G T C A A C T G A T G C C G T A A G T C
p-value:1e-13
log p-value:-3.197e+01
Information Content per bp:1.835
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.0 +/- 21.7bp
Average Position of motif in Background51.3 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GTSCKSCAGGRTSSCT
DCHCAGCAGGRGGCC-
 A C T G A C G T A T C G A G T C C A G T A T C G A G T C C G T A A C T G A C T G C T A G A C G T A T C G A T G C A G T C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GTSCKSCAGGRTSSCT
----ANCAGGATGT--
 A C T G A C G T A T C G A G T C C A G T A T C G A G T C C G T A A C T G A C T G C T A G A C G T A T C G A T G C A G T C A C G T
A C G T A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GTSCKSCAGGRTSSCT
CNGTCCTCCC--------
 A C G T A C G T A C T G A C G T A T C G A G T C C A G T A T C G A G T C C G T A A C T G A C T G C T A G A C G T A T C G A T G C A G T C A C G T
A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GTSCKSCAGGRTSSCT
-GGCTCYAKCAYC---
 A C T G A C G T A T C G A G T C C A G T A T C G A G T C C G T A A C T G A C T G C T A G A C G T A T C G A T G C A G T C A C G T
A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.48
Offset:1
Orientation:forward strand
Alignment:GTSCKSCAGGRTSSCT
-CACAGCAGGGGG---
 A C T G A C G T A T C G A G T C C A G T A T C G A G T C C G T A A C T G A C T G C T A G A C G T A T C G A T G C A G T C A C G T
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:6
Score:0.47
Offset:-3
Orientation:forward strand
Alignment:---GTSCKSCAGGRTSSCT
AAGGKGRCGCAGGCA----
 A C G T A C G T A C G T A C T G A C G T A T C G A G T C C A G T A T C G A G T C C G T A A C T G A C T G C T A G A C G T A T C G A T G C A G T C A C G T
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.46
Offset:3
Orientation:reverse strand
Alignment:GTSCKSCAGGRTSSCT
---SDGCAGGTGCNS-
 A C T G A C G T A T C G A G T C C A G T A T C G A G T C C G T A A C T G A C T G C T A G A C G T A T C G A T G C A G T C A C G T
A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:8
Score:0.46
Offset:0
Orientation:forward strand
Alignment:GTSCKSCAGGRTSSCT
ATGCAACAGGTGG---
 A C T G A C G T A T C G A G T C C A G T A T C G A G T C C G T A A C T G A C T G C T A G A C G T A T C G A T G C A G T C A C G T
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.46
Offset:4
Orientation:reverse strand
Alignment:GTSCKSCAGGRTSSCT----
----NGTAGGTTGGCATNNN
 A C T G A C G T A T C G A G T C C A G T A T C G A G T C C G T A A C T G A C T G C T A G A C G T A T C G A T G C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.45
Offset:0
Orientation:reverse strand
Alignment:GTSCKSCAGGRTSSCT
NCNCAGCGGGGGGTC-
 A C T G A C G T A T C G A G T C C A G T A T C G A G T C C G T A A C T G A C T G C T A G A C G T A T C G A T G C A G T C A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T