Information for 2-CCACCAGGKGGCGCTT (Motif 3)

A G T C A G T C C G T A A G T C A T G C C G T A C T A G A C T G C A T G A T C G A T C G A G T C C T A G G T A C A G C T A C G T
Reverse Opposite:
G T C A C T G A C A T G A G T C A C T G A T G C A T G C G T A C A G T C A G T C A C G T A T C G A C T G G C A T A C T G A C T G
p-value:1e-14
log p-value:-3.331e+01
Information Content per bp:1.780
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.9 +/- 20.4bp
Average Position of motif in Background48.2 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGKGGCGCTT---
GCCASCAGGGGGCGCYVNNG
 A C G T A G T C A G T C C G T A A G T C A T G C C G T A C T A G A C T G C A T G A T C G A T C G A G T C C T A G G T A C A G C T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---CCACCAGGKGGCGCTT
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C A T G C C G T A C T A G A C T G C A T G A T C G A T C G A G T C C T A G G T A C A G C T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---CCACCAGGKGGCGCTT-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C A T G C C G T A C T A G A C T G C A T G A T C G A T C G A G T C C T A G G T A C A G C T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGKGGCGCTT
CCCCCCCGGGGGNN---
 A C G T A G T C A G T C C G T A A G T C A T G C C G T A C T A G A C T G C A T G A T C G A T C G A G T C C T A G G T A C A G C T A C G T
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G A C G T A C G T A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGKGGCGCTT
NCCCCCCCGGGGGGN---
 A C G T A C G T A G T C A G T C C G T A A G T C A T G C C G T A C T A G A C T G C A T G A T C G A T C G A G T C C T A G G T A C A G C T A C G T
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G A C G T A C G T A C G T

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGKGGCGCTT
ACCCCCCCGGGGGGN---
 A C G T A C G T A G T C A G T C C G T A A G T C A T G C C G T A C T A G A C T G C A T G A T C G A T C G A G T C C T A G G T A C A G C T A C G T
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGKGGCGCTT
DCHCAGCAGGRGGCC---
 A C G T A C G T A G T C A G T C C G T A A G T C A T G C C G T A C T A G A C T G C A T G A T C G A T C G A G T C C T A G G T A C A G C T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCACCAGGKGGCGCTT--
-NNNAAGGGGGCGGGNNN
 A G T C A G T C C G T A A G T C A T G C C G T A C T A G A C T G C A T G A T C G A T C G A G T C C T A G G T A C A G C T A C G T A C G T A C G T
A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCACCAGGKGGCGCTT
CACAGCAGGGGG-----
 A C G T A G T C A G T C C G T A A G T C A T G C C G T A C T A G A C T G C A T G A T C G A T C G A G T C C T A G G T A C A G C T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCACCAGGKGGCGCTT
--NNCAGGTGNN----
 A G T C A G T C C G T A A G T C A T G C C G T A C T A G A C T G C A T G A T C G A T C G A G T C C T A G G T A C A G C T A C G T
A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T A C G T A C G T