Information for 13-SCCCTSCMCTGGCCNC (Motif 25)

T A C G A T G C A G T C G T A C G A C T A T G C A G T C T G C A T A G C A C G T C A T G T A C G A G T C A G T C A C G T A G T C
Reverse Opposite:
A C T G T G A C C T A G A C T G A T G C G T A C G T C A A T C G A C G T T A C G T A C G C T G A A C T G A C T G T A C G A T G C
p-value:1e-8
log p-value:-1.921e+01
Information Content per bp:1.653
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.92%
Number of Background Sequences with motif291.1
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets50.3 +/- 22.6bp
Average Position of motif in Background49.7 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-SCCCTSCMCTGGCCNC
TGWCCTCARNTGACC--
 A C G T T A C G A T G C A G T C G T A C G A C T A T G C A G T C T G C A T A G C A C G T C A T G T A C G A G T C A G T C A C G T A G T C
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:SCCCTSCMCTGGCCNC
--CCCCCTTGGGCCCC
 T A C G A T G C A G T C G T A C G A C T A T G C A G T C T G C A T A G C A C G T C A T G T A C G A G T C A G T C A C G T A G T C
A C G T A C G T A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-SCCCTSCMCTGGCCNC--
TGACCTAAAGTAACCTCTG
 A C G T T A C G A T G C A G T C G T A C G A C T A T G C A G T C T G C A T A G C A C G T C A T G T A C G A G T C A G T C A C G T A G T C A C G T A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----SCCCTSCMCTGGCCNC
TAGCGCCCCCTGGTGGCCA-
 A C G T A C G T A C G T A C G T T A C G A T G C A G T C G T A C G A C T A T G C A G T C T G C A T A G C A C G T C A T G T A C G A G T C A G T C A C G T A G T C
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:5
Score:0.58
Offset:9
Orientation:reverse strand
Alignment:SCCCTSCMCTGGCCNC-
---------TGACCYCT
 T A C G A T G C A G T C G T A C G A C T A T G C A G T C T G C A T A G C A C G T C A T G T A C G A G T C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----SCCCTSCMCTGGCCNC
ANAGTGCCACCTGGTGGCCA-
 A C G T A C G T A C G T A C G T A C G T T A C G A T G C A G T C G T A C G A C T A T G C A G T C T G C A T A G C A C G T C A T G T A C G A G T C A G T C A C G T A G T C
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------SCCCTSCMCTGGCCNC
CNNBRGCGCCCCCTGSTGGC---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T G C A G T C G T A C G A C T A T G C A G T C T G C A T A G C A C G T C A T G T A C G A G T C A G T C A C G T A G T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-SCCCTSCMCTGGCCNC
TGACCTNTAGTAACCC-
 A C G T T A C G A T G C A G T C G T A C G A C T A T G C A G T C T G C A T A G C A C G T C A T G T A C G A G T C A G T C A C G T A G T C
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.55
Offset:9
Orientation:reverse strand
Alignment:SCCCTSCMCTGGCCNC-
---------TGACCTYA
 T A C G A T G C A G T C G T A C G A C T A T G C A G T C T G C A T A G C A C G T C A T G T A C G A G T C A G T C A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0057.1_Rxra_1/Jaspar

Match Rank:10
Score:0.55
Offset:4
Orientation:forward strand
Alignment:SCCCTSCMCTGGCCNC-----
----TGTCGTGACCCCTTAAT
 T A C G A T G C A G T C G T A C G A C T A T G C A G T C T G C A T A G C A C G T C A T G T A C G A G T C A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T